Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0631

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0629 and EX28DRAFT_0630 overlap by 4 nucleotidesEX28DRAFT_0630 and EX28DRAFT_0631 are separated by 221 nucleotidesEX28DRAFT_0631 and EX28DRAFT_0632 are separated by 66 nucleotidesEX28DRAFT_0632 and EX28DRAFT_0633 are separated by 466 nucleotides EX28DRAFT_0629: EX28DRAFT_0629 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 626,285 to 626,953 _0629 EX28DRAFT_0630: EX28DRAFT_0630 - ABC-type polar amino acid transport system, ATPase component, at 626,950 to 627,702 _0630 EX28DRAFT_0631: EX28DRAFT_0631 - DNA-binding HTH domain-containing proteins, at 627,924 to 628,646 _0631 EX28DRAFT_0632: EX28DRAFT_0632 - Protein of unknown function (DUF2594), at 628,713 to 628,937 _0632 EX28DRAFT_0633: EX28DRAFT_0633 - two component transcriptional regulator, LuxR family, at 629,404 to 630,060 _0633 Position (kb) 627 628 629Strain fitness (log2 ratio) -2 -1 0 1 2at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.097 kb on - strand, within EX28DRAFT_0630at 627.186 kb on - strand, within EX28DRAFT_0630at 627.268 kb on - strand, within EX28DRAFT_0630at 627.287 kb on + strand, within EX28DRAFT_0630at 627.288 kb on - strand, within EX28DRAFT_0630at 627.339 kb on + strand, within EX28DRAFT_0630at 627.371 kb on - strand, within EX28DRAFT_0630at 627.732 kb on + strandat 627.806 kb on - strandat 627.815 kb on - strandat 627.869 kb on + strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.875 kb on - strandat 627.876 kb on + strandat 627.885 kb on + strandat 627.886 kb on - strandat 627.888 kb on + strandat 627.889 kb on - strandat 627.896 kb on - strandat 627.896 kb on - strandat 627.896 kb on - strandat 627.917 kb on - strandat 627.919 kb on + strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.923 kb on + strandat 627.924 kb on - strandat 627.924 kb on - strandat 627.924 kb on - strandat 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.001 kb on - strand, within EX28DRAFT_0631at 628.013 kb on - strand, within EX28DRAFT_0631at 628.013 kb on - strand, within EX28DRAFT_0631at 628.079 kb on + strand, within EX28DRAFT_0631at 628.088 kb on + strand, within EX28DRAFT_0631at 628.110 kb on + strand, within EX28DRAFT_0631at 628.110 kb on + strand, within EX28DRAFT_0631at 628.134 kb on + strand, within EX28DRAFT_0631at 628.240 kb on + strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.248 kb on - strand, within EX28DRAFT_0631at 628.268 kb on - strand, within EX28DRAFT_0631at 628.302 kb on - strand, within EX28DRAFT_0631at 628.334 kb on + strand, within EX28DRAFT_0631at 628.337 kb on + strand, within EX28DRAFT_0631at 628.337 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.343 kb on - strand, within EX28DRAFT_0631at 628.442 kb on + strand, within EX28DRAFT_0631at 628.442 kb on + strand, within EX28DRAFT_0631at 628.550 kb on + strand, within EX28DRAFT_0631at 628.656 kb on - strandat 628.808 kb on + strand, within EX28DRAFT_0632at 628.881 kb on + strand, within EX28DRAFT_0632at 628.882 kb on - strand, within EX28DRAFT_0632at 628.882 kb on - strand, within EX28DRAFT_0632at 628.997 kb on + strandat 628.998 kb on - strandat 629.046 kb on - strandat 629.328 kb on - strandat 629.328 kb on - strandat 629.328 kb on - strandat 629.328 kb on - strandat 629.328 kb on - strandat 629.351 kb on + strandat 629.351 kb on + strandat 629.351 kb on + strandat 629.351 kb on + strandat 629.351 kb on + strandat 629.352 kb on - strandat 629.352 kb on - strandat 629.352 kb on - strandat 629.352 kb on - strandat 629.352 kb on - strandat 629.353 kb on + strandat 629.354 kb on - strandat 629.363 kb on + strandat 629.363 kb on + strandat 629.386 kb on - strandat 629.386 kb on - strandat 629.453 kb on + strandat 629.453 kb on + strandat 629.453 kb on + strandat 629.453 kb on + strandat 629.454 kb on - strandat 629.472 kb on + strand, within EX28DRAFT_0633at 629.472 kb on + strand, within EX28DRAFT_0633at 629.472 kb on + strand, within EX28DRAFT_0633at 629.472 kb on + strand, within EX28DRAFT_0633at 629.472 kb on + strand, within EX28DRAFT_0633at 629.473 kb on - strand, within EX28DRAFT_0633at 629.473 kb on - strand, within EX28DRAFT_0633at 629.473 kb on - strand, within EX28DRAFT_0633at 629.475 kb on + strand, within EX28DRAFT_0633at 629.475 kb on + strand, within EX28DRAFT_0633at 629.475 kb on + strand, within EX28DRAFT_0633at 629.475 kb on + strand, within EX28DRAFT_0633at 629.476 kb on - strand, within EX28DRAFT_0633at 629.476 kb on - strand, within EX28DRAFT_0633at 629.476 kb on - strand, within EX28DRAFT_0633at 629.476 kb on - strand, within EX28DRAFT_0633at 629.481 kb on + strand, within EX28DRAFT_0633at 629.481 kb on + strand, within EX28DRAFT_0633at 629.481 kb on + strand, within EX28DRAFT_0633at 629.482 kb on - strand, within EX28DRAFT_0633at 629.482 kb on - strand, within EX28DRAFT_0633at 629.482 kb on - strand, within EX28DRAFT_0633at 629.484 kb on + strand, within EX28DRAFT_0633at 629.484 kb on + strand, within EX28DRAFT_0633at 629.485 kb on - strand, within EX28DRAFT_0633at 629.523 kb on - strand, within EX28DRAFT_0633at 629.556 kb on - strand, within EX28DRAFT_0633at 629.565 kb on + strand, within EX28DRAFT_0633at 629.565 kb on + strand, within EX28DRAFT_0633at 629.565 kb on + strand, within EX28DRAFT_0633at 629.565 kb on + strand, within EX28DRAFT_0633at 629.566 kb on - strand, within EX28DRAFT_0633at 629.566 kb on - strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.571 kb on + strand, within EX28DRAFT_0633at 629.572 kb on - strand, within EX28DRAFT_0633at 629.572 kb on - strand, within EX28DRAFT_0633at 629.572 kb on - strand, within EX28DRAFT_0633at 629.572 kb on - strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.616 kb on + strand, within EX28DRAFT_0633at 629.617 kb on - strand, within EX28DRAFT_0633at 629.617 kb on - strand, within EX28DRAFT_0633at 629.617 kb on - strand, within EX28DRAFT_0633at 629.617 kb on - strand, within EX28DRAFT_0633at 629.617 kb on - strand, within EX28DRAFT_0633at 629.628 kb on + strand, within EX28DRAFT_0633at 629.628 kb on + strand, within EX28DRAFT_0633at 629.628 kb on + strand, within EX28DRAFT_0633at 629.629 kb on - strand, within EX28DRAFT_0633at 629.629 kb on - strand, within EX28DRAFT_0633

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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627,094 - EX28DRAFT_0630 0.19 +0.2
627,094 - EX28DRAFT_0630 0.19 +0.1
627,094 - EX28DRAFT_0630 0.19 +0.2
627,094 - EX28DRAFT_0630 0.19 -0.4
627,097 - EX28DRAFT_0630 0.20 -0.7
627,186 - EX28DRAFT_0630 0.31 +0.3
627,268 - EX28DRAFT_0630 0.42 +1.3
627,287 + EX28DRAFT_0630 0.45 -0.1
627,288 - EX28DRAFT_0630 0.45 -0.3
627,339 + EX28DRAFT_0630 0.52 +0.2
627,371 - EX28DRAFT_0630 0.56 -0.6
627,732 + -0.7
627,806 - +0.8
627,815 - -1.8
627,869 + +0.5
627,870 - +0.5
627,870 - +1.7
627,870 - +1.4
627,870 - +0.9
627,875 - +2.1
627,876 + +0.3
627,885 + -0.7
627,886 - +0.4
627,888 + -0.9
627,889 - +1.2
627,896 - +0.5
627,896 - +0.6
627,896 - +1.7
627,917 - +1.0
627,919 + -1.0
627,920 - +0.7
627,920 - +1.5
627,920 - +0.7
627,920 - +1.0
627,923 + +1.2
627,924 - +1.0
627,924 - +1.0
627,924 - +0.3
628,000 + EX28DRAFT_0631 0.11 +0.9
628,000 + EX28DRAFT_0631 0.11 +1.1
628,000 + EX28DRAFT_0631 0.11 +1.0
628,000 + EX28DRAFT_0631 0.11 +1.0
628,001 - EX28DRAFT_0631 0.11 -0.6
628,013 - EX28DRAFT_0631 0.12 +1.4
628,013 - EX28DRAFT_0631 0.12 +0.9
628,079 + EX28DRAFT_0631 0.21 +0.5
628,088 + EX28DRAFT_0631 0.23 +1.0
628,110 + EX28DRAFT_0631 0.26 +1.5
628,110 + EX28DRAFT_0631 0.26 +1.2
628,134 + EX28DRAFT_0631 0.29 +0.4
628,240 + EX28DRAFT_0631 0.44 +1.5
628,241 - EX28DRAFT_0631 0.44 +0.1
628,241 - EX28DRAFT_0631 0.44 +0.3
628,241 - EX28DRAFT_0631 0.44 +0.5
628,248 - EX28DRAFT_0631 0.45 +1.2
628,268 - EX28DRAFT_0631 0.48 +0.3
628,302 - EX28DRAFT_0631 0.52 +0.3
628,334 + EX28DRAFT_0631 0.57 +0.6
628,337 + EX28DRAFT_0631 0.57 +0.9
628,337 + EX28DRAFT_0631 0.57 +1.6
628,342 + EX28DRAFT_0631 0.58 +1.5
628,342 + EX28DRAFT_0631 0.58 +1.2
628,342 + EX28DRAFT_0631 0.58 +1.2
628,343 - EX28DRAFT_0631 0.58 -0.9
628,442 + EX28DRAFT_0631 0.72 -0.3
628,442 + EX28DRAFT_0631 0.72 +0.7
628,550 + EX28DRAFT_0631 0.87 +0.9
628,656 - -1.7
628,808 + EX28DRAFT_0632 0.42 -1.6
628,881 + EX28DRAFT_0632 0.75 -1.8
628,882 - EX28DRAFT_0632 0.75 -0.5
628,882 - EX28DRAFT_0632 0.75 -1.1
628,997 + -2.0
628,998 - -0.1
629,046 - -0.6
629,328 - +0.9
629,328 - +1.9
629,328 - +0.6
629,328 - +2.7
629,328 - +1.5
629,351 + -0.1
629,351 + +0.1
629,351 + +0.5
629,351 + -0.2
629,351 + -1.8
629,352 - +1.6
629,352 - +0.8
629,352 - +1.0
629,352 - +0.3
629,352 - +1.0
629,353 + +1.1
629,354 - +0.3
629,363 + +0.3
629,363 + +0.9
629,386 - +0.2
629,386 - +1.1
629,453 + +0.7
629,453 + +0.4
629,453 + +2.2
629,453 + +1.2
629,454 - +0.6
629,472 + EX28DRAFT_0633 0.10 +0.8
629,472 + EX28DRAFT_0633 0.10 +1.4
629,472 + EX28DRAFT_0633 0.10 +0.9
629,472 + EX28DRAFT_0633 0.10 +1.8
629,472 + EX28DRAFT_0633 0.10 +0.8
629,473 - EX28DRAFT_0633 0.11 +0.6
629,473 - EX28DRAFT_0633 0.11 +1.4
629,473 - EX28DRAFT_0633 0.11 +1.1
629,475 + EX28DRAFT_0633 0.11 +1.2
629,475 + EX28DRAFT_0633 0.11 +0.7
629,475 + EX28DRAFT_0633 0.11 +1.7
629,475 + EX28DRAFT_0633 0.11 +0.7
629,476 - EX28DRAFT_0633 0.11 +1.6
629,476 - EX28DRAFT_0633 0.11 +0.1
629,476 - EX28DRAFT_0633 0.11 +1.7
629,476 - EX28DRAFT_0633 0.11 +1.3
629,481 + EX28DRAFT_0633 0.12 +1.5
629,481 + EX28DRAFT_0633 0.12 +0.9
629,481 + EX28DRAFT_0633 0.12 +1.0
629,482 - EX28DRAFT_0633 0.12 +0.9
629,482 - EX28DRAFT_0633 0.12 +1.3
629,482 - EX28DRAFT_0633 0.12 -1.1
629,484 + EX28DRAFT_0633 0.12 +1.3
629,484 + EX28DRAFT_0633 0.12 +1.4
629,485 - EX28DRAFT_0633 0.12 +2.1
629,523 - EX28DRAFT_0633 0.18 +1.1
629,556 - EX28DRAFT_0633 0.23 +0.5
629,565 + EX28DRAFT_0633 0.25 +1.4
629,565 + EX28DRAFT_0633 0.25 +1.2
629,565 + EX28DRAFT_0633 0.25 +0.9
629,565 + EX28DRAFT_0633 0.25 +1.8
629,566 - EX28DRAFT_0633 0.25 +0.6
629,566 - EX28DRAFT_0633 0.25 +1.7
629,571 + EX28DRAFT_0633 0.25 +0.6
629,571 + EX28DRAFT_0633 0.25 +1.0
629,571 + EX28DRAFT_0633 0.25 +1.1
629,571 + EX28DRAFT_0633 0.25 +1.1
629,571 + EX28DRAFT_0633 0.25 +1.0
629,571 + EX28DRAFT_0633 0.25 +0.9
629,571 + EX28DRAFT_0633 0.25 +0.6
629,571 + EX28DRAFT_0633 0.25 +1.0
629,571 + EX28DRAFT_0633 0.25 +1.0
629,572 - EX28DRAFT_0633 0.26 +0.5
629,572 - EX28DRAFT_0633 0.26 +0.4
629,572 - EX28DRAFT_0633 0.26 +0.2
629,572 - EX28DRAFT_0633 0.26 +0.8
629,616 + EX28DRAFT_0633 0.32 +1.1
629,616 + EX28DRAFT_0633 0.32 +0.6
629,616 + EX28DRAFT_0633 0.32 +1.0
629,616 + EX28DRAFT_0633 0.32 +0.7
629,616 + EX28DRAFT_0633 0.32 +0.7
629,616 + EX28DRAFT_0633 0.32 +1.3
629,616 + EX28DRAFT_0633 0.32 +1.0
629,616 + EX28DRAFT_0633 0.32 -0.1
629,617 - EX28DRAFT_0633 0.32 +0.3
629,617 - EX28DRAFT_0633 0.32 +0.4
629,617 - EX28DRAFT_0633 0.32 +1.6
629,617 - EX28DRAFT_0633 0.32 +1.1
629,617 - EX28DRAFT_0633 0.32 +1.2
629,628 + EX28DRAFT_0633 0.34 +0.5
629,628 + EX28DRAFT_0633 0.34 +1.3
629,628 + EX28DRAFT_0633 0.34 +1.0
629,629 - EX28DRAFT_0633 0.34 +1.7
629,629 - EX28DRAFT_0633 0.34 +0.4

Or see this region's nucleotide sequence