Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0598 and EX28DRAFT_0599 overlap by 4 nucleotides EX28DRAFT_0599 and EX28DRAFT_0600 are separated by 205 nucleotides EX28DRAFT_0600 and EX28DRAFT_0601 are separated by 9 nucleotides EX28DRAFT_0601 and EX28DRAFT_0602 are separated by 129 nucleotides EX28DRAFT_0602 and EX28DRAFT_0603 are separated by 101 nucleotides
EX28DRAFT_0598: EX28DRAFT_0598 - diguanylate cyclase (GGDEF) domain, at 600,344 to 602,152
_0598
EX28DRAFT_0599: EX28DRAFT_0599 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 602,149 to 602,949
_0599
EX28DRAFT_0600: EX28DRAFT_0600 - RNA, at 603,155 to 603,241
_0600
EX28DRAFT_0601: EX28DRAFT_0601 - Protein of unknown function (DUF2525), at 603,251 to 603,478
_0601
EX28DRAFT_0602: EX28DRAFT_0602 - Dextransucrase DSRB, at 603,608 to 603,796
_0602
EX28DRAFT_0603: EX28DRAFT_0603 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 603,898 to 604,521
_0603
Position (kb) 602
603 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 601.171 kb on + strand, within EX28DRAFT_0598 at 601.172 kb on - strand, within EX28DRAFT_0598 at 601.196 kb on + strand, within EX28DRAFT_0598 at 601.197 kb on - strand, within EX28DRAFT_0598 at 601.238 kb on - strand, within EX28DRAFT_0598 at 601.323 kb on + strand, within EX28DRAFT_0598 at 601.324 kb on + strand, within EX28DRAFT_0598 at 601.325 kb on - strand, within EX28DRAFT_0598 at 601.571 kb on - strand, within EX28DRAFT_0598 at 601.581 kb on + strand, within EX28DRAFT_0598 at 601.582 kb on - strand, within EX28DRAFT_0598 at 601.625 kb on + strand, within EX28DRAFT_0598 at 601.625 kb on + strand, within EX28DRAFT_0598 at 601.626 kb on - strand, within EX28DRAFT_0598 at 601.626 kb on - strand, within EX28DRAFT_0598 at 601.783 kb on + strand, within EX28DRAFT_0598 at 601.960 kb on + strand, within EX28DRAFT_0598 at 601.981 kb on + strand at 602.064 kb on - strand at 602.266 kb on - strand, within EX28DRAFT_0599 at 602.513 kb on - strand, within EX28DRAFT_0599 at 602.619 kb on + strand, within EX28DRAFT_0599 at 602.711 kb on - strand, within EX28DRAFT_0599 at 602.836 kb on - strand, within EX28DRAFT_0599 at 602.879 kb on + strand at 602.879 kb on + strand at 602.879 kb on + strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 603.110 kb on - strand at 603.115 kb on + strand at 603.117 kb on + strand at 603.145 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.202 kb on + strand, within EX28DRAFT_0600 at 603.275 kb on - strand, within EX28DRAFT_0601 at 603.318 kb on + strand, within EX28DRAFT_0601 at 603.319 kb on - strand, within EX28DRAFT_0601 at 603.460 kb on - strand at 603.511 kb on + strand at 603.515 kb on + strand at 603.515 kb on + strand at 603.516 kb on - strand at 603.518 kb on - strand at 603.578 kb on + strand at 603.579 kb on - strand at 603.607 kb on + strand at 603.607 kb on + strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.705 kb on - strand, within EX28DRAFT_0602 at 603.795 kb on - strand at 603.876 kb on - strand at 603.891 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 601,171 + EX28DRAFT_0598 0.46 -1.5 601,172 - EX28DRAFT_0598 0.46 -0.6 601,196 + EX28DRAFT_0598 0.47 -1.0 601,197 - EX28DRAFT_0598 0.47 +0.3 601,238 - EX28DRAFT_0598 0.49 -0.2 601,323 + EX28DRAFT_0598 0.54 -0.8 601,324 + EX28DRAFT_0598 0.54 +0.5 601,325 - EX28DRAFT_0598 0.54 -0.2 601,571 - EX28DRAFT_0598 0.68 +2.3 601,581 + EX28DRAFT_0598 0.68 -2.9 601,582 - EX28DRAFT_0598 0.68 +0.2 601,625 + EX28DRAFT_0598 0.71 +0.6 601,625 + EX28DRAFT_0598 0.71 -0.2 601,626 - EX28DRAFT_0598 0.71 +0.0 601,626 - EX28DRAFT_0598 0.71 +0.4 601,783 + EX28DRAFT_0598 0.80 -0.1 601,960 + EX28DRAFT_0598 0.89 -1.2 601,981 + +0.3 602,064 - -0.7 602,266 - EX28DRAFT_0599 0.15 +0.9 602,513 - EX28DRAFT_0599 0.45 -0.6 602,619 + EX28DRAFT_0599 0.59 +0.9 602,711 - EX28DRAFT_0599 0.70 -1.0 602,836 - EX28DRAFT_0599 0.86 -0.8 602,879 + -0.3 602,879 + +0.9 602,879 + +0.1 602,880 - +0.3 602,880 - -3.0 602,880 - +0.3 602,880 - +0.4 602,931 + -0.9 602,931 + +0.1 602,932 - +0.0 603,110 - +0.0 603,115 + -0.2 603,117 + +1.4 603,145 + -0.1 603,157 + +0.2 603,157 + -0.7 603,157 + -0.1 603,157 + +0.1 603,158 - -0.1 603,158 - -0.4 603,158 - -0.3 603,202 + EX28DRAFT_0600 0.54 -0.4 603,275 - EX28DRAFT_0601 0.11 -1.1 603,318 + EX28DRAFT_0601 0.29 -3.2 603,319 - EX28DRAFT_0601 0.30 +0.7 603,460 - +0.4 603,511 + -0.2 603,515 + +1.1 603,515 + -0.5 603,516 - +0.5 603,518 - +0.1 603,578 + +0.2 603,579 - -0.0 603,607 + -1.2 603,607 + +0.1 603,608 - -0.4 603,608 - -1.2 603,608 - -1.3 603,608 - +0.2 603,705 - EX28DRAFT_0602 0.51 +0.2 603,795 - +0.1 603,876 - -0.2 603,891 + -0.0
Or see this region's nucleotide sequence