Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0487 and EX28DRAFT_0488 are separated by 343 nucleotides EX28DRAFT_0488 and EX28DRAFT_0489 are separated by 91 nucleotides EX28DRAFT_0489 and EX28DRAFT_0490 are separated by 22 nucleotides
EX28DRAFT_0487: EX28DRAFT_0487 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 475,275 to 478,604
_0487
EX28DRAFT_0488: EX28DRAFT_0488 - uridine kinase (EC 2.7.1.48), at 478,948 to 479,589
_0488
EX28DRAFT_0489: EX28DRAFT_0489 - deoxycytidine triphosphate deaminase, at 479,681 to 480,262
_0489
EX28DRAFT_0490: EX28DRAFT_0490 - Uncharacterized protein involved in outer membrane biogenesis, at 480,285 to 482,135
_0490
Position (kb) 478
479
480 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 478.064 kb on - strand, within EX28DRAFT_0487 at 478.077 kb on + strand, within EX28DRAFT_0487 at 478.078 kb on - strand, within EX28DRAFT_0487 at 478.078 kb on - strand, within EX28DRAFT_0487 at 478.142 kb on + strand, within EX28DRAFT_0487 at 478.261 kb on + strand, within EX28DRAFT_0487 at 478.261 kb on + strand, within EX28DRAFT_0487 at 478.261 kb on + strand, within EX28DRAFT_0487 at 478.327 kb on + strand at 478.328 kb on - strand at 478.328 kb on - strand at 478.377 kb on - strand at 478.512 kb on + strand at 478.513 kb on - strand at 478.513 kb on - strand at 478.518 kb on - strand at 478.524 kb on - strand at 478.557 kb on + strand at 478.574 kb on + strand at 478.592 kb on - strand at 478.592 kb on - strand at 478.664 kb on + strand at 478.674 kb on + strand at 478.674 kb on + strand at 478.680 kb on - strand at 478.739 kb on + strand at 478.739 kb on + strand at 478.740 kb on - strand at 478.881 kb on - strand at 478.881 kb on - strand at 478.957 kb on - strand at 478.957 kb on - strand at 478.957 kb on - strand at 478.977 kb on + strand at 479.026 kb on - strand, within EX28DRAFT_0488 at 479.054 kb on + strand, within EX28DRAFT_0488 at 479.055 kb on - strand, within EX28DRAFT_0488 at 479.092 kb on + strand, within EX28DRAFT_0488 at 479.092 kb on + strand, within EX28DRAFT_0488 at 479.143 kb on + strand, within EX28DRAFT_0488 at 479.143 kb on + strand, within EX28DRAFT_0488 at 479.144 kb on - strand, within EX28DRAFT_0488 at 479.144 kb on - strand, within EX28DRAFT_0488 at 479.190 kb on - strand, within EX28DRAFT_0488 at 479.231 kb on - strand, within EX28DRAFT_0488 at 479.237 kb on - strand, within EX28DRAFT_0488 at 479.408 kb on + strand, within EX28DRAFT_0488 at 479.409 kb on - strand, within EX28DRAFT_0488 at 479.449 kb on + strand, within EX28DRAFT_0488 at 479.504 kb on - strand, within EX28DRAFT_0488 at 479.533 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.559 kb on - strand at 479.559 kb on - strand at 480.384 kb on + strand at 480.384 kb on + strand at 480.385 kb on - strand at 480.385 kb on - strand at 480.485 kb on + strand, within EX28DRAFT_0490
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 478,064 - EX28DRAFT_0487 0.84 -0.1 478,077 + EX28DRAFT_0487 0.84 -0.0 478,078 - EX28DRAFT_0487 0.84 -0.7 478,078 - EX28DRAFT_0487 0.84 +0.1 478,142 + EX28DRAFT_0487 0.86 +0.4 478,261 + EX28DRAFT_0487 0.90 -0.6 478,261 + EX28DRAFT_0487 0.90 +0.8 478,261 + EX28DRAFT_0487 0.90 +0.3 478,327 + +0.1 478,328 - -0.1 478,328 - -1.0 478,377 - -3.0 478,512 + -0.1 478,513 - +0.4 478,513 - +1.2 478,518 - -0.2 478,524 - +0.4 478,557 + -0.1 478,574 + +0.2 478,592 - +0.3 478,592 - +1.0 478,664 + +0.1 478,674 + -0.7 478,674 + +0.2 478,680 - +0.4 478,739 + -0.0 478,739 + +0.3 478,740 - -0.5 478,881 - +0.2 478,881 - +0.7 478,957 - -0.9 478,957 - -1.6 478,957 - +0.0 478,977 + -0.6 479,026 - EX28DRAFT_0488 0.12 -0.1 479,054 + EX28DRAFT_0488 0.17 +0.5 479,055 - EX28DRAFT_0488 0.17 -0.1 479,092 + EX28DRAFT_0488 0.22 -0.2 479,092 + EX28DRAFT_0488 0.22 +0.7 479,143 + EX28DRAFT_0488 0.30 -2.8 479,143 + EX28DRAFT_0488 0.30 -0.1 479,144 - EX28DRAFT_0488 0.31 -1.1 479,144 - EX28DRAFT_0488 0.31 -0.2 479,190 - EX28DRAFT_0488 0.38 -0.1 479,231 - EX28DRAFT_0488 0.44 -1.2 479,237 - EX28DRAFT_0488 0.45 +0.9 479,408 + EX28DRAFT_0488 0.72 +0.1 479,409 - EX28DRAFT_0488 0.72 -0.0 479,449 + EX28DRAFT_0488 0.78 -0.1 479,504 - EX28DRAFT_0488 0.87 -1.5 479,533 - -0.0 479,548 - -0.9 479,548 - -1.4 479,548 - -0.3 479,548 - -0.4 479,559 - +0.5 479,559 - +0.1 480,384 + +1.4 480,384 + +0.3 480,385 - -0.0 480,385 - +0.9 480,485 + EX28DRAFT_0490 0.11 +0.6
Or see this region's nucleotide sequence