Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0486

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0485 and EX28DRAFT_0486 are separated by 130 nucleotidesEX28DRAFT_0486 and EX28DRAFT_0487 overlap by 36 nucleotides EX28DRAFT_0485: EX28DRAFT_0485 - Molecular chaperone, at 472,955 to 474,307 _0485 EX28DRAFT_0486: EX28DRAFT_0486 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 474,438 to 475,310 _0486 EX28DRAFT_0487: EX28DRAFT_0487 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 475,275 to 478,604 _0487 Position (kb) 474 475 476Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 473.608 kb on + strand, within EX28DRAFT_0485at 473.666 kb on + strand, within EX28DRAFT_0485at 473.667 kb on - strand, within EX28DRAFT_0485at 473.667 kb on - strand, within EX28DRAFT_0485at 473.667 kb on - strand, within EX28DRAFT_0485at 473.899 kb on + strand, within EX28DRAFT_0485at 473.997 kb on + strand, within EX28DRAFT_0485at 473.998 kb on - strand, within EX28DRAFT_0485at 474.022 kb on - strand, within EX28DRAFT_0485at 474.064 kb on + strand, within EX28DRAFT_0485at 474.065 kb on - strand, within EX28DRAFT_0485at 474.283 kb on + strandat 474.288 kb on + strandat 474.289 kb on - strandat 474.311 kb on - strandat 474.311 kb on - strandat 474.391 kb on + strandat 474.391 kb on + strandat 474.392 kb on - strandat 474.392 kb on - strandat 474.442 kb on - strandat 474.465 kb on + strandat 474.538 kb on - strand, within EX28DRAFT_0486at 474.541 kb on - strand, within EX28DRAFT_0486at 474.578 kb on - strand, within EX28DRAFT_0486at 474.609 kb on - strand, within EX28DRAFT_0486at 474.609 kb on - strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.063 kb on + strand, within EX28DRAFT_0486at 475.101 kb on + strand, within EX28DRAFT_0486at 475.153 kb on - strand, within EX28DRAFT_0486at 475.153 kb on - strand, within EX28DRAFT_0486at 475.247 kb on + strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.248 kb on - strandat 475.254 kb on + strandat 475.255 kb on - strandat 475.256 kb on + strandat 475.291 kb on + strandat 475.292 kb on - strandat 475.308 kb on + strandat 475.483 kb on + strandat 475.483 kb on + strandat 475.519 kb on + strandat 475.519 kb on + strandat 475.664 kb on + strand, within EX28DRAFT_0487at 475.700 kb on + strand, within EX28DRAFT_0487at 475.735 kb on - strand, within EX28DRAFT_0487at 475.743 kb on + strand, within EX28DRAFT_0487at 475.744 kb on - strand, within EX28DRAFT_0487at 475.944 kb on - strand, within EX28DRAFT_0487at 476.006 kb on + strand, within EX28DRAFT_0487at 476.116 kb on + strand, within EX28DRAFT_0487at 476.124 kb on + strand, within EX28DRAFT_0487at 476.124 kb on + strand, within EX28DRAFT_0487at 476.125 kb on - strand, within EX28DRAFT_0487at 476.126 kb on + strand, within EX28DRAFT_0487at 476.225 kb on + strand, within EX28DRAFT_0487at 476.225 kb on + strand, within EX28DRAFT_0487at 476.234 kb on - strand, within EX28DRAFT_0487at 476.270 kb on - strand, within EX28DRAFT_0487

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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473,608 + EX28DRAFT_0485 0.48 -0.4
473,666 + EX28DRAFT_0485 0.53 -0.4
473,667 - EX28DRAFT_0485 0.53 -1.0
473,667 - EX28DRAFT_0485 0.53 -0.7
473,667 - EX28DRAFT_0485 0.53 +0.4
473,899 + EX28DRAFT_0485 0.70 +0.6
473,997 + EX28DRAFT_0485 0.77 -0.0
473,998 - EX28DRAFT_0485 0.77 +0.8
474,022 - EX28DRAFT_0485 0.79 +0.1
474,064 + EX28DRAFT_0485 0.82 +0.5
474,065 - EX28DRAFT_0485 0.82 +0.1
474,283 + +0.1
474,288 + +0.1
474,289 - +0.0
474,311 - -0.3
474,311 - +0.3
474,391 + -4.5
474,391 + +0.9
474,392 - -0.7
474,392 - -0.4
474,442 - +1.2
474,465 + +0.0
474,538 - EX28DRAFT_0486 0.11 +0.0
474,541 - EX28DRAFT_0486 0.12 -0.5
474,578 - EX28DRAFT_0486 0.16 -1.0
474,609 - EX28DRAFT_0486 0.20 -1.8
474,609 - EX28DRAFT_0486 0.20 +0.2
475,063 + EX28DRAFT_0486 0.72 +0.1
475,063 + EX28DRAFT_0486 0.72 +0.1
475,063 + EX28DRAFT_0486 0.72 -0.1
475,101 + EX28DRAFT_0486 0.76 -1.7
475,153 - EX28DRAFT_0486 0.82 -0.9
475,153 - EX28DRAFT_0486 0.82 -0.7
475,247 + -2.4
475,248 - +0.8
475,248 - -0.0
475,248 - +0.4
475,248 - -0.0
475,254 + +0.1
475,255 - +0.1
475,256 + -0.1
475,291 + -2.2
475,292 - +1.2
475,308 + -1.3
475,483 + +0.3
475,483 + -0.6
475,519 + -1.8
475,519 + +0.7
475,664 + EX28DRAFT_0487 0.12 -3.0
475,700 + EX28DRAFT_0487 0.13 +0.6
475,735 - EX28DRAFT_0487 0.14 -1.8
475,743 + EX28DRAFT_0487 0.14 +0.4
475,744 - EX28DRAFT_0487 0.14 +0.9
475,944 - EX28DRAFT_0487 0.20 -0.7
476,006 + EX28DRAFT_0487 0.22 -0.3
476,116 + EX28DRAFT_0487 0.25 -0.2
476,124 + EX28DRAFT_0487 0.25 +1.0
476,124 + EX28DRAFT_0487 0.25 -1.5
476,125 - EX28DRAFT_0487 0.26 +0.2
476,126 + EX28DRAFT_0487 0.26 -0.3
476,225 + EX28DRAFT_0487 0.29 +0.6
476,225 + EX28DRAFT_0487 0.29 +0.5
476,234 - EX28DRAFT_0487 0.29 -0.3
476,270 - EX28DRAFT_0487 0.30 -0.1

Or see this region's nucleotide sequence