Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0456

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0455 and EX28DRAFT_0456 are separated by 123 nucleotidesEX28DRAFT_0456 and EX28DRAFT_0457 are separated by 24 nucleotides EX28DRAFT_0455: EX28DRAFT_0455 - Phage integrase family, at 438,142 to 439,500 _0455 EX28DRAFT_0456: EX28DRAFT_0456 - hypothetical protein, at 439,624 to 439,882 _0456 EX28DRAFT_0457: EX28DRAFT_0457 - hypothetical protein, at 439,907 to 440,848 _0457 Position (kb) 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 438.641 kb on + strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.642 kb on - strand, within EX28DRAFT_0455at 438.707 kb on + strand, within EX28DRAFT_0455at 438.711 kb on - strand, within EX28DRAFT_0455at 438.815 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.850 kb on - strand, within EX28DRAFT_0455at 438.856 kb on - strand, within EX28DRAFT_0455at 438.884 kb on + strand, within EX28DRAFT_0455at 438.919 kb on + strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.007 kb on - strand, within EX28DRAFT_0455at 439.256 kb on + strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.257 kb on - strand, within EX28DRAFT_0455at 439.288 kb on + strand, within EX28DRAFT_0455at 439.301 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.336 kb on - strand, within EX28DRAFT_0455at 439.376 kb on + strandat 439.377 kb on - strandat 439.423 kb on - strandat 439.425 kb on + strandat 439.443 kb on + strandat 439.444 kb on - strandat 439.444 kb on - strandat 439.468 kb on + strandat 439.469 kb on - strandat 439.583 kb on - strandat 439.584 kb on + strandat 439.594 kb on - strandat 439.643 kb on - strandat 439.643 kb on - strandat 439.718 kb on + strand, within EX28DRAFT_0456at 439.718 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.737 kb on + strand, within EX28DRAFT_0456at 439.738 kb on - strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.767 kb on + strand, within EX28DRAFT_0456at 439.768 kb on - strand, within EX28DRAFT_0456at 439.801 kb on - strand, within EX28DRAFT_0456at 439.807 kb on + strand, within EX28DRAFT_0456at 439.839 kb on - strand, within EX28DRAFT_0456at 439.873 kb on + strandat 439.883 kb on + strandat 439.935 kb on - strandat 439.935 kb on - strandat 439.938 kb on - strandat 439.938 kb on - strandat 439.972 kb on - strandat 440.064 kb on + strand, within EX28DRAFT_0457at 440.093 kb on - strand, within EX28DRAFT_0457at 440.280 kb on + strand, within EX28DRAFT_0457at 440.296 kb on - strand, within EX28DRAFT_0457at 440.349 kb on + strand, within EX28DRAFT_0457at 440.398 kb on + strand, within EX28DRAFT_0457at 440.399 kb on - strand, within EX28DRAFT_0457at 440.463 kb on + strand, within EX28DRAFT_0457at 440.464 kb on - strand, within EX28DRAFT_0457at 440.489 kb on + strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.490 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457at 440.497 kb on - strand, within EX28DRAFT_0457at 440.542 kb on + strand, within EX28DRAFT_0457at 440.545 kb on - strand, within EX28DRAFT_0457at 440.545 kb on - strand, within EX28DRAFT_0457at 440.555 kb on + strand, within EX28DRAFT_0457at 440.571 kb on + strand, within EX28DRAFT_0457at 440.578 kb on - strand, within EX28DRAFT_0457at 440.620 kb on + strand, within EX28DRAFT_0457at 440.686 kb on + strand, within EX28DRAFT_0457at 440.713 kb on - strand, within EX28DRAFT_0457at 440.804 kb on + strandat 440.805 kb on - strandat 440.829 kb on - strandat 440.829 kb on - strandat 440.867 kb on + strandat 440.868 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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438,641 + EX28DRAFT_0455 0.37 -1.1
438,642 - EX28DRAFT_0455 0.37 +0.2
438,642 - EX28DRAFT_0455 0.37 +1.3
438,642 - EX28DRAFT_0455 0.37 -0.5
438,707 + EX28DRAFT_0455 0.42 +0.5
438,711 - EX28DRAFT_0455 0.42 -0.9
438,815 - EX28DRAFT_0455 0.50 +0.4
438,850 - EX28DRAFT_0455 0.52 -1.9
438,850 - EX28DRAFT_0455 0.52 +0.2
438,850 - EX28DRAFT_0455 0.52 -0.2
438,856 - EX28DRAFT_0455 0.53 -0.2
438,884 + EX28DRAFT_0455 0.55 +0.3
438,919 + EX28DRAFT_0455 0.57 -1.1
439,007 - EX28DRAFT_0455 0.64 -0.8
439,007 - EX28DRAFT_0455 0.64 -0.4
439,007 - EX28DRAFT_0455 0.64 +0.2
439,256 + EX28DRAFT_0455 0.82 +0.5
439,257 - EX28DRAFT_0455 0.82 -0.9
439,257 - EX28DRAFT_0455 0.82 -0.1
439,288 + EX28DRAFT_0455 0.84 +0.6
439,301 - EX28DRAFT_0455 0.85 -0.9
439,336 - EX28DRAFT_0455 0.88 -0.5
439,336 - EX28DRAFT_0455 0.88 -1.6
439,336 - EX28DRAFT_0455 0.88 -0.2
439,376 + -1.3
439,377 - +0.6
439,423 - +0.6
439,425 + -1.9
439,443 + +0.0
439,444 - -1.0
439,444 - -0.9
439,468 + -1.1
439,469 - +0.1
439,583 - +0.0
439,584 + -0.5
439,594 - +2.0
439,643 - +1.3
439,643 - +0.0
439,718 + EX28DRAFT_0456 0.36 -0.4
439,718 + EX28DRAFT_0456 0.36 -0.3
439,737 + EX28DRAFT_0456 0.44 +0.6
439,737 + EX28DRAFT_0456 0.44 +0.9
439,738 - EX28DRAFT_0456 0.44 +0.3
439,767 + EX28DRAFT_0456 0.55 +0.2
439,767 + EX28DRAFT_0456 0.55 +0.0
439,768 - EX28DRAFT_0456 0.56 +1.6
439,801 - EX28DRAFT_0456 0.68 -0.2
439,807 + EX28DRAFT_0456 0.71 +1.0
439,839 - EX28DRAFT_0456 0.83 +1.0
439,873 + +0.6
439,883 + +0.1
439,935 - -0.9
439,935 - +0.7
439,938 - -1.3
439,938 - -0.5
439,972 - -0.6
440,064 + EX28DRAFT_0457 0.17 +0.5
440,093 - EX28DRAFT_0457 0.20 +0.0
440,280 + EX28DRAFT_0457 0.40 -0.3
440,296 - EX28DRAFT_0457 0.41 -1.3
440,349 + EX28DRAFT_0457 0.47 +0.8
440,398 + EX28DRAFT_0457 0.52 -2.3
440,399 - EX28DRAFT_0457 0.52 -0.5
440,463 + EX28DRAFT_0457 0.59 -0.9
440,464 - EX28DRAFT_0457 0.59 -0.2
440,489 + EX28DRAFT_0457 0.62 +0.4
440,490 - EX28DRAFT_0457 0.62 +0.8
440,490 - EX28DRAFT_0457 0.62 +0.1
440,490 - EX28DRAFT_0457 0.62 -0.7
440,497 - EX28DRAFT_0457 0.63 +0.1
440,497 - EX28DRAFT_0457 0.63 -0.1
440,542 + EX28DRAFT_0457 0.67 +0.8
440,545 - EX28DRAFT_0457 0.68 -0.0
440,545 - EX28DRAFT_0457 0.68 +1.0
440,555 + EX28DRAFT_0457 0.69 +0.5
440,571 + EX28DRAFT_0457 0.70 +0.2
440,578 - EX28DRAFT_0457 0.71 -1.1
440,620 + EX28DRAFT_0457 0.76 -2.3
440,686 + EX28DRAFT_0457 0.83 +2.6
440,713 - EX28DRAFT_0457 0.86 -0.4
440,804 + +0.2
440,805 - -2.0
440,829 - -0.4
440,829 - -1.7
440,867 + -1.1
440,868 - +0.5

Or see this region's nucleotide sequence