Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0420 and EX28DRAFT_0421 are separated by 12 nucleotides EX28DRAFT_0421 and EX28DRAFT_0422 are separated by 326 nucleotides
EX28DRAFT_0420: EX28DRAFT_0420 - PTS system, beta-glucoside-specific IIABC component, at 398,033 to 399,886
_0420
EX28DRAFT_0421: EX28DRAFT_0421 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 399,899 to 401,293
_0421
EX28DRAFT_0422: EX28DRAFT_0422 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 401,620 to 403,038
_0422
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -1
0
1 at 398.980 kb on + strand, within EX28DRAFT_0420 at 398.981 kb on - strand, within EX28DRAFT_0420 at 399.130 kb on - strand, within EX28DRAFT_0420 at 399.163 kb on - strand, within EX28DRAFT_0420 at 399.163 kb on - strand, within EX28DRAFT_0420 at 399.187 kb on + strand, within EX28DRAFT_0420 at 399.187 kb on + strand, within EX28DRAFT_0420 at 399.252 kb on - strand, within EX28DRAFT_0420 at 399.444 kb on + strand, within EX28DRAFT_0420 at 399.533 kb on - strand, within EX28DRAFT_0420 at 399.793 kb on + strand at 399.794 kb on - strand at 400.082 kb on + strand, within EX28DRAFT_0421 at 400.129 kb on + strand, within EX28DRAFT_0421 at 400.130 kb on - strand, within EX28DRAFT_0421 at 400.215 kb on - strand, within EX28DRAFT_0421 at 400.307 kb on + strand, within EX28DRAFT_0421 at 400.377 kb on - strand, within EX28DRAFT_0421 at 400.378 kb on + strand, within EX28DRAFT_0421 at 400.379 kb on - strand, within EX28DRAFT_0421 at 400.420 kb on + strand, within EX28DRAFT_0421 at 400.420 kb on + strand, within EX28DRAFT_0421 at 400.420 kb on + strand, within EX28DRAFT_0421 at 400.420 kb on + strand, within EX28DRAFT_0421 at 400.420 kb on + strand, within EX28DRAFT_0421 at 400.421 kb on - strand, within EX28DRAFT_0421 at 400.421 kb on - strand, within EX28DRAFT_0421 at 400.471 kb on + strand, within EX28DRAFT_0421 at 400.484 kb on + strand, within EX28DRAFT_0421 at 400.570 kb on + strand, within EX28DRAFT_0421 at 400.570 kb on + strand, within EX28DRAFT_0421 at 400.571 kb on - strand, within EX28DRAFT_0421 at 400.571 kb on - strand, within EX28DRAFT_0421 at 400.593 kb on - strand, within EX28DRAFT_0421 at 400.621 kb on - strand, within EX28DRAFT_0421 at 400.695 kb on - strand, within EX28DRAFT_0421 at 400.696 kb on + strand, within EX28DRAFT_0421 at 400.697 kb on - strand, within EX28DRAFT_0421 at 400.797 kb on - strand, within EX28DRAFT_0421 at 400.797 kb on - strand, within EX28DRAFT_0421 at 401.045 kb on - strand, within EX28DRAFT_0421 at 401.048 kb on + strand, within EX28DRAFT_0421 at 401.049 kb on - strand, within EX28DRAFT_0421 at 401.111 kb on + strand, within EX28DRAFT_0421 at 401.114 kb on - strand, within EX28DRAFT_0421 at 401.183 kb on + strand at 401.243 kb on + strand at 401.244 kb on - strand at 401.249 kb on + strand at 401.250 kb on - strand at 401.330 kb on - strand at 401.436 kb on - strand at 401.664 kb on + strand at 401.868 kb on + strand, within EX28DRAFT_0422 at 401.869 kb on - strand, within EX28DRAFT_0422 at 401.869 kb on - strand, within EX28DRAFT_0422 at 402.178 kb on + strand, within EX28DRAFT_0422 at 402.179 kb on - strand, within EX28DRAFT_0422 at 402.248 kb on + strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.271 kb on + strand, within EX28DRAFT_0422
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 398,980 + EX28DRAFT_0420 0.51 +0.4 398,981 - EX28DRAFT_0420 0.51 +0.7 399,130 - EX28DRAFT_0420 0.59 -0.0 399,163 - EX28DRAFT_0420 0.61 +1.0 399,163 - EX28DRAFT_0420 0.61 -0.2 399,187 + EX28DRAFT_0420 0.62 +0.5 399,187 + EX28DRAFT_0420 0.62 +1.4 399,252 - EX28DRAFT_0420 0.66 +0.3 399,444 + EX28DRAFT_0420 0.76 +1.1 399,533 - EX28DRAFT_0420 0.81 -0.1 399,793 + +0.6 399,794 - -0.6 400,082 + EX28DRAFT_0421 0.13 -0.0 400,129 + EX28DRAFT_0421 0.16 +0.3 400,130 - EX28DRAFT_0421 0.17 +0.4 400,215 - EX28DRAFT_0421 0.23 -0.0 400,307 + EX28DRAFT_0421 0.29 -0.9 400,377 - EX28DRAFT_0421 0.34 -1.2 400,378 + EX28DRAFT_0421 0.34 +0.7 400,379 - EX28DRAFT_0421 0.34 -0.1 400,420 + EX28DRAFT_0421 0.37 -0.6 400,420 + EX28DRAFT_0421 0.37 +0.2 400,420 + EX28DRAFT_0421 0.37 +1.2 400,420 + EX28DRAFT_0421 0.37 -0.0 400,420 + EX28DRAFT_0421 0.37 -0.7 400,421 - EX28DRAFT_0421 0.37 +0.2 400,421 - EX28DRAFT_0421 0.37 +0.2 400,471 + EX28DRAFT_0421 0.41 +0.7 400,484 + EX28DRAFT_0421 0.42 +0.0 400,570 + EX28DRAFT_0421 0.48 -0.2 400,570 + EX28DRAFT_0421 0.48 +0.5 400,571 - EX28DRAFT_0421 0.48 +0.3 400,571 - EX28DRAFT_0421 0.48 +1.7 400,593 - EX28DRAFT_0421 0.50 -0.9 400,621 - EX28DRAFT_0421 0.52 +0.9 400,695 - EX28DRAFT_0421 0.57 -0.2 400,696 + EX28DRAFT_0421 0.57 +0.4 400,697 - EX28DRAFT_0421 0.57 -0.2 400,797 - EX28DRAFT_0421 0.64 -0.5 400,797 - EX28DRAFT_0421 0.64 +0.5 401,045 - EX28DRAFT_0421 0.82 +0.4 401,048 + EX28DRAFT_0421 0.82 -0.3 401,049 - EX28DRAFT_0421 0.82 +0.6 401,111 + EX28DRAFT_0421 0.87 +0.5 401,114 - EX28DRAFT_0421 0.87 +0.8 401,183 + -0.1 401,243 + +0.2 401,244 - -1.4 401,249 + -0.6 401,250 - -0.0 401,330 - -0.8 401,436 - +0.4 401,664 + +0.4 401,868 + EX28DRAFT_0422 0.17 -0.1 401,869 - EX28DRAFT_0422 0.18 +0.7 401,869 - EX28DRAFT_0422 0.18 +0.3 402,178 + EX28DRAFT_0422 0.39 -0.1 402,179 - EX28DRAFT_0422 0.39 -0.3 402,248 + EX28DRAFT_0422 0.44 +0.3 402,249 - EX28DRAFT_0422 0.44 -1.2 402,249 - EX28DRAFT_0422 0.44 +0.0 402,271 + EX28DRAFT_0422 0.46 +0.5
Or see this region's nucleotide sequence