Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0397

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0396 and EX28DRAFT_0397 are separated by 47 nucleotidesEX28DRAFT_0397 and EX28DRAFT_0398 are separated by 64 nucleotides EX28DRAFT_0396: EX28DRAFT_0396 - PTS system, fructose-specific, IIB component/PTS system, fructose subfamily, IIC component, at 370,219 to 371,904 _0396 EX28DRAFT_0397: EX28DRAFT_0397 - Endonuclease IV (EC 3.1.21.-), at 371,952 to 372,809 _0397 EX28DRAFT_0398: EX28DRAFT_0398 - conserved hypothetical integral membrane protein, at 372,874 to 373,920 _0398 Position (kb) 371 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1at 370.953 kb on + strand, within EX28DRAFT_0396at 370.953 kb on + strand, within EX28DRAFT_0396at 370.954 kb on - strand, within EX28DRAFT_0396at 370.980 kb on + strand, within EX28DRAFT_0396at 371.172 kb on + strand, within EX28DRAFT_0396at 371.238 kb on + strand, within EX28DRAFT_0396at 371.308 kb on + strand, within EX28DRAFT_0396at 371.309 kb on - strand, within EX28DRAFT_0396at 371.491 kb on + strand, within EX28DRAFT_0396at 371.491 kb on + strand, within EX28DRAFT_0396at 371.492 kb on - strand, within EX28DRAFT_0396at 371.492 kb on - strand, within EX28DRAFT_0396at 371.492 kb on - strand, within EX28DRAFT_0396at 371.679 kb on - strand, within EX28DRAFT_0396at 372.069 kb on - strand, within EX28DRAFT_0397at 372.179 kb on - strand, within EX28DRAFT_0397at 372.182 kb on + strand, within EX28DRAFT_0397at 372.182 kb on + strand, within EX28DRAFT_0397at 372.183 kb on - strand, within EX28DRAFT_0397at 372.183 kb on - strand, within EX28DRAFT_0397at 372.192 kb on + strand, within EX28DRAFT_0397at 372.192 kb on + strand, within EX28DRAFT_0397at 372.283 kb on - strand, within EX28DRAFT_0397at 372.300 kb on - strand, within EX28DRAFT_0397at 372.434 kb on + strand, within EX28DRAFT_0397at 372.434 kb on + strand, within EX28DRAFT_0397at 372.525 kb on + strand, within EX28DRAFT_0397at 372.525 kb on + strand, within EX28DRAFT_0397at 372.526 kb on - strand, within EX28DRAFT_0397at 372.526 kb on - strand, within EX28DRAFT_0397at 372.596 kb on - strand, within EX28DRAFT_0397at 372.634 kb on + strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.635 kb on - strand, within EX28DRAFT_0397at 372.802 kb on + strandat 372.839 kb on - strandat 372.839 kb on - strandat 373.092 kb on + strand, within EX28DRAFT_0398at 373.092 kb on + strand, within EX28DRAFT_0398at 373.098 kb on + strand, within EX28DRAFT_0398at 373.179 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.325 kb on + strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.326 kb on - strand, within EX28DRAFT_0398at 373.370 kb on + strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.371 kb on - strand, within EX28DRAFT_0398at 373.732 kb on - strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.746 kb on + strand, within EX28DRAFT_0398at 373.750 kb on + strand, within EX28DRAFT_0398

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
370,953 + EX28DRAFT_0396 0.44 -1.8
370,953 + EX28DRAFT_0396 0.44 +0.2
370,954 - EX28DRAFT_0396 0.44 -0.3
370,980 + EX28DRAFT_0396 0.45 +0.5
371,172 + EX28DRAFT_0396 0.57 -1.4
371,238 + EX28DRAFT_0396 0.60 -0.1
371,308 + EX28DRAFT_0396 0.65 -0.8
371,309 - EX28DRAFT_0396 0.65 +1.2
371,491 + EX28DRAFT_0396 0.75 -0.5
371,491 + EX28DRAFT_0396 0.75 -1.4
371,492 - EX28DRAFT_0396 0.76 +0.2
371,492 - EX28DRAFT_0396 0.76 -0.1
371,492 - EX28DRAFT_0396 0.76 -0.8
371,679 - EX28DRAFT_0396 0.87 -0.4
372,069 - EX28DRAFT_0397 0.14 -0.1
372,179 - EX28DRAFT_0397 0.26 +0.5
372,182 + EX28DRAFT_0397 0.27 +0.2
372,182 + EX28DRAFT_0397 0.27 -3.4
372,183 - EX28DRAFT_0397 0.27 +0.1
372,183 - EX28DRAFT_0397 0.27 -0.2
372,192 + EX28DRAFT_0397 0.28 +1.0
372,192 + EX28DRAFT_0397 0.28 -0.2
372,283 - EX28DRAFT_0397 0.39 +0.3
372,300 - EX28DRAFT_0397 0.41 +0.2
372,434 + EX28DRAFT_0397 0.56 +0.3
372,434 + EX28DRAFT_0397 0.56 +0.3
372,525 + EX28DRAFT_0397 0.67 -0.2
372,525 + EX28DRAFT_0397 0.67 -0.4
372,526 - EX28DRAFT_0397 0.67 +0.6
372,526 - EX28DRAFT_0397 0.67 -0.3
372,596 - EX28DRAFT_0397 0.75 +0.5
372,634 + EX28DRAFT_0397 0.79 -2.5
372,635 - EX28DRAFT_0397 0.80 +0.7
372,635 - EX28DRAFT_0397 0.80 +0.0
372,635 - EX28DRAFT_0397 0.80 -0.2
372,802 + -0.5
372,839 - -0.5
372,839 - -0.9
373,092 + EX28DRAFT_0398 0.21 +1.1
373,092 + EX28DRAFT_0398 0.21 -0.4
373,098 + EX28DRAFT_0398 0.21 -0.3
373,179 + EX28DRAFT_0398 0.29 +0.1
373,325 + EX28DRAFT_0398 0.43 -0.0
373,325 + EX28DRAFT_0398 0.43 +0.1
373,325 + EX28DRAFT_0398 0.43 +0.1
373,325 + EX28DRAFT_0398 0.43 +0.2
373,326 - EX28DRAFT_0398 0.43 -0.5
373,326 - EX28DRAFT_0398 0.43 -0.3
373,326 - EX28DRAFT_0398 0.43 -0.3
373,370 + EX28DRAFT_0398 0.47 +0.1
373,371 - EX28DRAFT_0398 0.47 +1.0
373,371 - EX28DRAFT_0398 0.47 +0.3
373,371 - EX28DRAFT_0398 0.47 -0.4
373,732 - EX28DRAFT_0398 0.82 -3.0
373,746 + EX28DRAFT_0398 0.83 -1.3
373,746 + EX28DRAFT_0398 0.83 -0.2
373,750 + EX28DRAFT_0398 0.84 -0.4

Or see this region's nucleotide sequence