Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0370

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0368 and EX28DRAFT_0369 are separated by 135 nucleotidesEX28DRAFT_0369 and EX28DRAFT_0370 are separated by 209 nucleotidesEX28DRAFT_0370 and EX28DRAFT_0371 are separated by 138 nucleotides EX28DRAFT_0368: EX28DRAFT_0368 - malate:quinone-oxidoreductase, at 339,958 to 341,607 _0368 EX28DRAFT_0369: EX28DRAFT_0369 - Serine protease inhibitor ecotin, at 341,743 to 342,246 _0369 EX28DRAFT_0370: EX28DRAFT_0370 - Protein of unknown function (DUF2534), at 342,456 to 342,716 _0370 EX28DRAFT_0371: EX28DRAFT_0371 - Arabinose efflux permease, at 342,855 to 344,042 _0371 Position (kb) 342 343Strain fitness (log2 ratio) -3 -2 -1 0 1at 341.518 kb on + strandat 341.518 kb on + strandat 341.519 kb on - strandat 341.749 kb on + strandat 341.750 kb on - strandat 341.819 kb on + strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.820 kb on - strand, within EX28DRAFT_0369at 341.846 kb on + strand, within EX28DRAFT_0369at 341.874 kb on - strand, within EX28DRAFT_0369at 341.958 kb on - strand, within EX28DRAFT_0369at 342.063 kb on + strand, within EX28DRAFT_0369at 342.258 kb on + strandat 342.259 kb on - strandat 342.316 kb on - strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.421 kb on + strandat 342.422 kb on - strandat 342.423 kb on + strandat 342.425 kb on + strandat 342.425 kb on + strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.426 kb on - strandat 342.431 kb on + strandat 342.432 kb on - strandat 342.518 kb on - strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.521 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.576 kb on + strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.577 kb on - strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.581 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.612 kb on + strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.613 kb on - strand, within EX28DRAFT_0370at 342.643 kb on - strand, within EX28DRAFT_0370at 342.715 kb on - strandat 342.731 kb on + strandat 342.735 kb on + strandat 342.736 kb on - strandat 342.736 kb on - strandat 342.809 kb on + strandat 342.920 kb on + strandat 342.921 kb on - strandat 342.933 kb on - strandat 342.947 kb on + strandat 342.947 kb on + strandat 342.971 kb on + strandat 343.047 kb on - strand, within EX28DRAFT_0371at 343.050 kb on - strand, within EX28DRAFT_0371at 343.092 kb on - strand, within EX28DRAFT_0371at 343.113 kb on + strand, within EX28DRAFT_0371at 343.325 kb on - strand, within EX28DRAFT_0371at 343.334 kb on - strand, within EX28DRAFT_0371at 343.339 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.419 kb on + strand, within EX28DRAFT_0371at 343.463 kb on + strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.464 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.467 kb on - strand, within EX28DRAFT_0371at 343.611 kb on - strand, within EX28DRAFT_0371at 343.644 kb on + strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371at 343.645 kb on - strand, within EX28DRAFT_0371

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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341,518 + -0.8
341,518 + -0.0
341,519 - +1.0
341,749 + +0.3
341,750 - -1.4
341,819 + EX28DRAFT_0369 0.15 +0.1
341,820 - EX28DRAFT_0369 0.15 -0.3
341,820 - EX28DRAFT_0369 0.15 -0.3
341,820 - EX28DRAFT_0369 0.15 +1.1
341,846 + EX28DRAFT_0369 0.20 +0.4
341,874 - EX28DRAFT_0369 0.26 +0.2
341,958 - EX28DRAFT_0369 0.43 +0.1
342,063 + EX28DRAFT_0369 0.63 -0.3
342,258 + +0.4
342,259 - +0.6
342,316 - -0.5
342,421 + +1.2
342,421 + -0.4
342,421 + +0.2
342,422 - -1.2
342,423 + +0.6
342,425 + -0.4
342,425 + +0.6
342,426 - -1.3
342,426 - +0.1
342,426 - -0.7
342,426 - +0.6
342,431 + +0.8
342,432 - +0.5
342,518 - EX28DRAFT_0370 0.24 +0.3
342,521 + EX28DRAFT_0370 0.25 +0.3
342,521 + EX28DRAFT_0370 0.25 +0.2
342,576 + EX28DRAFT_0370 0.46 -0.3
342,576 + EX28DRAFT_0370 0.46 +0.2
342,577 - EX28DRAFT_0370 0.46 +1.2
342,577 - EX28DRAFT_0370 0.46 +1.2
342,581 + EX28DRAFT_0370 0.48 -2.0
342,581 + EX28DRAFT_0370 0.48 +0.1
342,581 + EX28DRAFT_0370 0.48 -0.3
342,612 + EX28DRAFT_0370 0.60 -0.0
342,612 + EX28DRAFT_0370 0.60 +0.1
342,612 + EX28DRAFT_0370 0.60 +0.7
342,612 + EX28DRAFT_0370 0.60 -0.4
342,613 - EX28DRAFT_0370 0.60 -0.4
342,613 - EX28DRAFT_0370 0.60 -0.7
342,613 - EX28DRAFT_0370 0.60 -1.3
342,613 - EX28DRAFT_0370 0.60 +0.2
342,613 - EX28DRAFT_0370 0.60 -1.7
342,643 - EX28DRAFT_0370 0.72 +0.2
342,715 - -3.5
342,731 + -0.8
342,735 + +1.2
342,736 - +0.2
342,736 - -0.1
342,809 + +0.2
342,920 + -0.3
342,921 - +0.6
342,933 - +0.3
342,947 + +0.0
342,947 + -0.0
342,971 + +0.3
343,047 - EX28DRAFT_0371 0.16 -1.1
343,050 - EX28DRAFT_0371 0.16 +0.0
343,092 - EX28DRAFT_0371 0.20 +0.3
343,113 + EX28DRAFT_0371 0.22 -0.3
343,325 - EX28DRAFT_0371 0.40 +0.5
343,334 - EX28DRAFT_0371 0.40 -0.5
343,339 + EX28DRAFT_0371 0.41 -2.6
343,419 + EX28DRAFT_0371 0.47 +1.3
343,419 + EX28DRAFT_0371 0.47 -0.1
343,463 + EX28DRAFT_0371 0.51 +0.5
343,464 - EX28DRAFT_0371 0.51 -0.5
343,464 - EX28DRAFT_0371 0.51 -0.1
343,467 - EX28DRAFT_0371 0.52 +0.3
343,467 - EX28DRAFT_0371 0.52 -1.8
343,611 - EX28DRAFT_0371 0.64 -0.8
343,644 + EX28DRAFT_0371 0.66 +0.1
343,645 - EX28DRAFT_0371 0.66 -0.4
343,645 - EX28DRAFT_0371 0.66 +0.3

Or see this region's nucleotide sequence