Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0336

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0335 and EX28DRAFT_0336 are separated by 64 nucleotidesEX28DRAFT_0336 and EX28DRAFT_0337 are separated by 71 nucleotidesEX28DRAFT_0337 and EX28DRAFT_0338 are separated by 53 nucleotidesEX28DRAFT_0338 and EX28DRAFT_0339 are separated by 86 nucleotides EX28DRAFT_0335: EX28DRAFT_0335 - Chemotaxis signal transduction protein, at 297,651 to 298,655 _0335 EX28DRAFT_0336: EX28DRAFT_0336 - ribonuclease Z, at 298,720 to 299,637 _0336 EX28DRAFT_0337: EX28DRAFT_0337 - Predicted acyltransferase, at 299,709 to 300,170 _0337 EX28DRAFT_0338: EX28DRAFT_0338 - Uncharacterized conserved protein, at 300,224 to 300,529 _0338 EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911 _0339 Position (kb) 298 299 300Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 298.007 kb on + strand, within EX28DRAFT_0335at 298.007 kb on + strand, within EX28DRAFT_0335at 298.171 kb on + strand, within EX28DRAFT_0335at 298.172 kb on - strand, within EX28DRAFT_0335at 298.172 kb on - strand, within EX28DRAFT_0335at 298.252 kb on + strand, within EX28DRAFT_0335at 298.252 kb on + strand, within EX28DRAFT_0335at 298.253 kb on - strand, within EX28DRAFT_0335at 298.395 kb on - strand, within EX28DRAFT_0335at 298.523 kb on + strand, within EX28DRAFT_0335at 298.635 kb on - strandat 298.635 kb on - strandat 298.649 kb on + strandat 298.658 kb on + strandat 298.722 kb on - strandat 298.722 kb on - strandat 299.048 kb on + strand, within EX28DRAFT_0336at 299.175 kb on + strand, within EX28DRAFT_0336at 299.201 kb on + strand, within EX28DRAFT_0336at 299.323 kb on + strand, within EX28DRAFT_0336at 299.329 kb on - strand, within EX28DRAFT_0336at 299.560 kb on - strandat 299.617 kb on - strandat 299.673 kb on + strandat 299.674 kb on - strandat 299.676 kb on + strandat 299.678 kb on + strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.814 kb on + strand, within EX28DRAFT_0337at 299.859 kb on - strand, within EX28DRAFT_0337at 299.893 kb on - strand, within EX28DRAFT_0337at 300.045 kb on + strand, within EX28DRAFT_0337at 300.046 kb on - strand, within EX28DRAFT_0337at 300.078 kb on + strand, within EX28DRAFT_0337at 300.079 kb on - strand, within EX28DRAFT_0337at 300.143 kb on + strandat 300.188 kb on + strandat 300.189 kb on - strandat 300.206 kb on - strandat 300.208 kb on + strandat 300.208 kb on + strandat 300.209 kb on - strandat 300.209 kb on - strandat 300.224 kb on - strandat 300.297 kb on + strand, within EX28DRAFT_0338at 300.297 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.330 kb on - strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.332 kb on - strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.401 kb on - strand, within EX28DRAFT_0338at 300.404 kb on + strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.407 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.447 kb on - strand, within EX28DRAFT_0338at 300.548 kb on - strandat 300.548 kb on - strandat 300.549 kb on + strandat 300.549 kb on + strandat 300.550 kb on - strandat 300.550 kb on - strandat 300.563 kb on + strandat 300.563 kb on + strandat 300.564 kb on - strandat 300.568 kb on - strandat 300.568 kb on - strandat 300.586 kb on - strandat 300.589 kb on - strandat 300.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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298,007 + EX28DRAFT_0335 0.35 -0.1
298,007 + EX28DRAFT_0335 0.35 -0.9
298,171 + EX28DRAFT_0335 0.52 -0.1
298,172 - EX28DRAFT_0335 0.52 +0.2
298,172 - EX28DRAFT_0335 0.52 +0.1
298,252 + EX28DRAFT_0335 0.60 -2.5
298,252 + EX28DRAFT_0335 0.60 -0.2
298,253 - EX28DRAFT_0335 0.60 +0.2
298,395 - EX28DRAFT_0335 0.74 -1.9
298,523 + EX28DRAFT_0335 0.87 -0.1
298,635 - +0.4
298,635 - -1.8
298,649 + +0.3
298,658 + +1.0
298,722 - +1.0
298,722 - +0.4
299,048 + EX28DRAFT_0336 0.36 +0.1
299,175 + EX28DRAFT_0336 0.50 +0.8
299,201 + EX28DRAFT_0336 0.52 +0.5
299,323 + EX28DRAFT_0336 0.66 +0.2
299,329 - EX28DRAFT_0336 0.66 +0.7
299,560 - -0.7
299,617 - -0.0
299,673 + -0.6
299,674 - +0.5
299,676 + +1.1
299,678 + -1.0
299,729 - -0.3
299,729 - -1.3
299,729 - -0.0
299,729 - +1.0
299,814 + EX28DRAFT_0337 0.23 -1.5
299,859 - EX28DRAFT_0337 0.32 -0.5
299,893 - EX28DRAFT_0337 0.40 +0.1
300,045 + EX28DRAFT_0337 0.73 -0.2
300,046 - EX28DRAFT_0337 0.73 -0.4
300,078 + EX28DRAFT_0337 0.80 -0.1
300,079 - EX28DRAFT_0337 0.80 -0.3
300,143 + +0.5
300,188 + -1.7
300,189 - -2.1
300,206 - +0.5
300,208 + -0.8
300,208 + +0.4
300,209 - -0.5
300,209 - -0.0
300,224 - -0.2
300,297 + EX28DRAFT_0338 0.24 +0.4
300,297 + EX28DRAFT_0338 0.24 +0.4
300,329 + EX28DRAFT_0338 0.34 +0.1
300,329 + EX28DRAFT_0338 0.34 -0.4
300,330 - EX28DRAFT_0338 0.35 -1.9
300,331 + EX28DRAFT_0338 0.35 +1.0
300,331 + EX28DRAFT_0338 0.35 -1.5
300,331 + EX28DRAFT_0338 0.35 +0.6
300,332 - EX28DRAFT_0338 0.35 -3.2
300,400 + EX28DRAFT_0338 0.58 -0.5
300,400 + EX28DRAFT_0338 0.58 +0.3
300,400 + EX28DRAFT_0338 0.58 -0.2
300,401 - EX28DRAFT_0338 0.58 +0.1
300,404 + EX28DRAFT_0338 0.59 +0.2
300,405 - EX28DRAFT_0338 0.59 -1.6
300,405 - EX28DRAFT_0338 0.59 +0.2
300,405 - EX28DRAFT_0338 0.59 +0.1
300,407 + EX28DRAFT_0338 0.60 -0.2
300,431 + EX28DRAFT_0338 0.68 +0.2
300,431 + EX28DRAFT_0338 0.68 +0.6
300,446 + EX28DRAFT_0338 0.73 +0.2
300,446 + EX28DRAFT_0338 0.73 +0.6
300,447 - EX28DRAFT_0338 0.73 -2.4
300,548 - -0.5
300,548 - +1.1
300,549 + +0.8
300,549 + +2.9
300,550 - -0.2
300,550 - -0.6
300,563 + -0.2
300,563 + -0.6
300,564 - -0.8
300,568 - +2.5
300,568 - -2.4
300,586 - +0.5
300,589 - -2.4
300,589 - -0.0

Or see this region's nucleotide sequence