Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0335 and EX28DRAFT_0336 are separated by 64 nucleotides EX28DRAFT_0336 and EX28DRAFT_0337 are separated by 71 nucleotides EX28DRAFT_0337 and EX28DRAFT_0338 are separated by 53 nucleotides EX28DRAFT_0338 and EX28DRAFT_0339 are separated by 86 nucleotides
EX28DRAFT_0335: EX28DRAFT_0335 - Chemotaxis signal transduction protein, at 297,651 to 298,655
_0335
EX28DRAFT_0336: EX28DRAFT_0336 - ribonuclease Z, at 298,720 to 299,637
_0336
EX28DRAFT_0337: EX28DRAFT_0337 - Predicted acyltransferase, at 299,709 to 300,170
_0337
EX28DRAFT_0338: EX28DRAFT_0338 - Uncharacterized conserved protein, at 300,224 to 300,529
_0338
EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911
_0339
Position (kb)
298
299
300 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 298.007 kb on + strand, within EX28DRAFT_0335 at 298.007 kb on + strand, within EX28DRAFT_0335 at 298.171 kb on + strand, within EX28DRAFT_0335 at 298.172 kb on - strand, within EX28DRAFT_0335 at 298.172 kb on - strand, within EX28DRAFT_0335 at 298.252 kb on + strand, within EX28DRAFT_0335 at 298.252 kb on + strand, within EX28DRAFT_0335 at 298.253 kb on - strand, within EX28DRAFT_0335 at 298.395 kb on - strand, within EX28DRAFT_0335 at 298.523 kb on + strand, within EX28DRAFT_0335 at 298.635 kb on - strand at 298.635 kb on - strand at 298.649 kb on + strand at 298.658 kb on + strand at 298.722 kb on - strand at 298.722 kb on - strand at 299.048 kb on + strand, within EX28DRAFT_0336 at 299.175 kb on + strand, within EX28DRAFT_0336 at 299.201 kb on + strand, within EX28DRAFT_0336 at 299.323 kb on + strand, within EX28DRAFT_0336 at 299.329 kb on - strand, within EX28DRAFT_0336 at 299.560 kb on - strand at 299.617 kb on - strand at 299.673 kb on + strand at 299.674 kb on - strand at 299.676 kb on + strand at 299.678 kb on + strand at 299.729 kb on - strand at 299.729 kb on - strand at 299.729 kb on - strand at 299.729 kb on - strand at 299.814 kb on + strand, within EX28DRAFT_0337 at 299.859 kb on - strand, within EX28DRAFT_0337 at 299.893 kb on - strand, within EX28DRAFT_0337 at 300.045 kb on + strand, within EX28DRAFT_0337 at 300.046 kb on - strand, within EX28DRAFT_0337 at 300.078 kb on + strand, within EX28DRAFT_0337 at 300.079 kb on - strand, within EX28DRAFT_0337 at 300.143 kb on + strand at 300.188 kb on + strand at 300.189 kb on - strand at 300.206 kb on - strand at 300.208 kb on + strand at 300.208 kb on + strand at 300.209 kb on - strand at 300.209 kb on - strand at 300.224 kb on - strand at 300.297 kb on + strand, within EX28DRAFT_0338 at 300.297 kb on + strand, within EX28DRAFT_0338 at 300.329 kb on + strand, within EX28DRAFT_0338 at 300.329 kb on + strand, within EX28DRAFT_0338 at 300.330 kb on - strand, within EX28DRAFT_0338 at 300.331 kb on + strand, within EX28DRAFT_0338 at 300.331 kb on + strand, within EX28DRAFT_0338 at 300.331 kb on + strand, within EX28DRAFT_0338 at 300.332 kb on - strand, within EX28DRAFT_0338 at 300.400 kb on + strand, within EX28DRAFT_0338 at 300.400 kb on + strand, within EX28DRAFT_0338 at 300.400 kb on + strand, within EX28DRAFT_0338 at 300.401 kb on - strand, within EX28DRAFT_0338 at 300.404 kb on + strand, within EX28DRAFT_0338 at 300.405 kb on - strand, within EX28DRAFT_0338 at 300.405 kb on - strand, within EX28DRAFT_0338 at 300.405 kb on - strand, within EX28DRAFT_0338 at 300.407 kb on + strand, within EX28DRAFT_0338 at 300.431 kb on + strand, within EX28DRAFT_0338 at 300.431 kb on + strand, within EX28DRAFT_0338 at 300.446 kb on + strand, within EX28DRAFT_0338 at 300.446 kb on + strand, within EX28DRAFT_0338 at 300.447 kb on - strand, within EX28DRAFT_0338 at 300.548 kb on - strand at 300.548 kb on - strand at 300.549 kb on + strand at 300.549 kb on + strand at 300.550 kb on - strand at 300.550 kb on - strand at 300.563 kb on + strand at 300.563 kb on + strand at 300.564 kb on - strand at 300.568 kb on - strand at 300.568 kb on - strand at 300.586 kb on - strand at 300.589 kb on - strand at 300.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 298,007 + EX28DRAFT_0335 0.35 -0.1 298,007 + EX28DRAFT_0335 0.35 -0.9 298,171 + EX28DRAFT_0335 0.52 -0.1 298,172 - EX28DRAFT_0335 0.52 +0.2 298,172 - EX28DRAFT_0335 0.52 +0.1 298,252 + EX28DRAFT_0335 0.60 -2.5 298,252 + EX28DRAFT_0335 0.60 -0.2 298,253 - EX28DRAFT_0335 0.60 +0.2 298,395 - EX28DRAFT_0335 0.74 -1.9 298,523 + EX28DRAFT_0335 0.87 -0.1 298,635 - +0.4 298,635 - -1.8 298,649 + +0.3 298,658 + +1.0 298,722 - +1.0 298,722 - +0.4 299,048 + EX28DRAFT_0336 0.36 +0.1 299,175 + EX28DRAFT_0336 0.50 +0.8 299,201 + EX28DRAFT_0336 0.52 +0.5 299,323 + EX28DRAFT_0336 0.66 +0.2 299,329 - EX28DRAFT_0336 0.66 +0.7 299,560 - -0.7 299,617 - -0.0 299,673 + -0.6 299,674 - +0.5 299,676 + +1.1 299,678 + -1.0 299,729 - -0.3 299,729 - -1.3 299,729 - -0.0 299,729 - +1.0 299,814 + EX28DRAFT_0337 0.23 -1.5 299,859 - EX28DRAFT_0337 0.32 -0.5 299,893 - EX28DRAFT_0337 0.40 +0.1 300,045 + EX28DRAFT_0337 0.73 -0.2 300,046 - EX28DRAFT_0337 0.73 -0.4 300,078 + EX28DRAFT_0337 0.80 -0.1 300,079 - EX28DRAFT_0337 0.80 -0.3 300,143 + +0.5 300,188 + -1.7 300,189 - -2.1 300,206 - +0.5 300,208 + -0.8 300,208 + +0.4 300,209 - -0.5 300,209 - -0.0 300,224 - -0.2 300,297 + EX28DRAFT_0338 0.24 +0.4 300,297 + EX28DRAFT_0338 0.24 +0.4 300,329 + EX28DRAFT_0338 0.34 +0.1 300,329 + EX28DRAFT_0338 0.34 -0.4 300,330 - EX28DRAFT_0338 0.35 -1.9 300,331 + EX28DRAFT_0338 0.35 +1.0 300,331 + EX28DRAFT_0338 0.35 -1.5 300,331 + EX28DRAFT_0338 0.35 +0.6 300,332 - EX28DRAFT_0338 0.35 -3.2 300,400 + EX28DRAFT_0338 0.58 -0.5 300,400 + EX28DRAFT_0338 0.58 +0.3 300,400 + EX28DRAFT_0338 0.58 -0.2 300,401 - EX28DRAFT_0338 0.58 +0.1 300,404 + EX28DRAFT_0338 0.59 +0.2 300,405 - EX28DRAFT_0338 0.59 -1.6 300,405 - EX28DRAFT_0338 0.59 +0.2 300,405 - EX28DRAFT_0338 0.59 +0.1 300,407 + EX28DRAFT_0338 0.60 -0.2 300,431 + EX28DRAFT_0338 0.68 +0.2 300,431 + EX28DRAFT_0338 0.68 +0.6 300,446 + EX28DRAFT_0338 0.73 +0.2 300,446 + EX28DRAFT_0338 0.73 +0.6 300,447 - EX28DRAFT_0338 0.73 -2.4 300,548 - -0.5 300,548 - +1.1 300,549 + +0.8 300,549 + +2.9 300,550 - -0.2 300,550 - -0.6 300,563 + -0.2 300,563 + -0.6 300,564 - -0.8 300,568 - +2.5 300,568 - -2.4 300,586 - +0.5 300,589 - -2.4 300,589 - -0.0
Or see this region's nucleotide sequence