Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0257 and EX28DRAFT_0258 overlap by 1 nucleotides EX28DRAFT_0258 and EX28DRAFT_0259 are separated by 42 nucleotides
EX28DRAFT_0257: EX28DRAFT_0257 - Uncharacterized protein conserved in bacteria, at 215,977 to 219,456
_0257
EX28DRAFT_0258: EX28DRAFT_0258 - type VI secretion-associated protein, VC_A0119 family, at 219,456 to 221,057
_0258
EX28DRAFT_0259: EX28DRAFT_0259 - type VI secretion protein, VC_A0110 family, at 221,100 to 222,854
_0259
Position (kb) 219
220
221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 218.534 kb on + strand, within EX28DRAFT_0257 at 218.575 kb on + strand, within EX28DRAFT_0257 at 218.575 kb on + strand, within EX28DRAFT_0257 at 218.812 kb on - strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 218.828 kb on + strand, within EX28DRAFT_0257 at 219.038 kb on + strand, within EX28DRAFT_0257 at 219.039 kb on - strand, within EX28DRAFT_0257 at 219.050 kb on + strand, within EX28DRAFT_0257 at 219.050 kb on + strand, within EX28DRAFT_0257 at 219.077 kb on - strand, within EX28DRAFT_0257 at 219.127 kb on + strand at 219.128 kb on - strand at 219.128 kb on - strand at 219.128 kb on - strand at 219.130 kb on - strand at 219.271 kb on + strand at 219.271 kb on + strand at 219.271 kb on + strand at 219.272 kb on - strand at 219.272 kb on - strand at 219.272 kb on - strand at 219.618 kb on - strand, within EX28DRAFT_0258 at 219.618 kb on - strand, within EX28DRAFT_0258 at 219.619 kb on + strand, within EX28DRAFT_0258 at 219.619 kb on + strand, within EX28DRAFT_0258 at 219.713 kb on + strand, within EX28DRAFT_0258 at 219.723 kb on + strand, within EX28DRAFT_0258 at 219.723 kb on + strand, within EX28DRAFT_0258 at 219.724 kb on - strand, within EX28DRAFT_0258 at 219.724 kb on - strand, within EX28DRAFT_0258 at 219.726 kb on + strand, within EX28DRAFT_0258 at 219.927 kb on - strand, within EX28DRAFT_0258 at 220.011 kb on + strand, within EX28DRAFT_0258 at 220.079 kb on + strand, within EX28DRAFT_0258 at 220.191 kb on + strand, within EX28DRAFT_0258 at 220.372 kb on + strand, within EX28DRAFT_0258 at 220.437 kb on + strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.438 kb on - strand, within EX28DRAFT_0258 at 220.489 kb on - strand, within EX28DRAFT_0258 at 220.613 kb on + strand, within EX28DRAFT_0258 at 220.613 kb on + strand, within EX28DRAFT_0258 at 221.086 kb on - strand at 221.090 kb on + strand at 221.125 kb on - strand at 221.233 kb on - strand at 221.267 kb on - strand at 221.346 kb on + strand, within EX28DRAFT_0259 at 221.346 kb on + strand, within EX28DRAFT_0259 at 221.421 kb on - strand, within EX28DRAFT_0259 at 221.442 kb on - strand, within EX28DRAFT_0259 at 221.579 kb on + strand, within EX28DRAFT_0259 at 221.580 kb on - strand, within EX28DRAFT_0259 at 221.634 kb on + strand, within EX28DRAFT_0259 at 221.635 kb on - strand, within EX28DRAFT_0259 at 221.872 kb on + strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.006 kb on - strand, within EX28DRAFT_0259 at 222.010 kb on + strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259 at 222.011 kb on - strand, within EX28DRAFT_0259
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 218,534 + EX28DRAFT_0257 0.73 +0.6 218,575 + EX28DRAFT_0257 0.75 -0.0 218,575 + EX28DRAFT_0257 0.75 -0.7 218,812 - EX28DRAFT_0257 0.81 -0.6 218,828 + EX28DRAFT_0257 0.82 +0.7 218,828 + EX28DRAFT_0257 0.82 +0.0 218,828 + EX28DRAFT_0257 0.82 -0.1 219,038 + EX28DRAFT_0257 0.88 -0.1 219,039 - EX28DRAFT_0257 0.88 -0.2 219,050 + EX28DRAFT_0257 0.88 +1.0 219,050 + EX28DRAFT_0257 0.88 +0.9 219,077 - EX28DRAFT_0257 0.89 +0.0 219,127 + +0.0 219,128 - +0.1 219,128 - -2.3 219,128 - -1.2 219,130 - -0.2 219,271 + -0.0 219,271 + +0.1 219,271 + -0.2 219,272 - -0.3 219,272 - +0.4 219,272 - +0.9 219,618 - EX28DRAFT_0258 0.10 +0.5 219,618 - EX28DRAFT_0258 0.10 +0.4 219,619 + EX28DRAFT_0258 0.10 -0.0 219,619 + EX28DRAFT_0258 0.10 +0.9 219,713 + EX28DRAFT_0258 0.16 +0.9 219,723 + EX28DRAFT_0258 0.17 -0.0 219,723 + EX28DRAFT_0258 0.17 +0.3 219,724 - EX28DRAFT_0258 0.17 +1.2 219,724 - EX28DRAFT_0258 0.17 +0.3 219,726 + EX28DRAFT_0258 0.17 +0.9 219,927 - EX28DRAFT_0258 0.29 -1.1 220,011 + EX28DRAFT_0258 0.35 -1.6 220,079 + EX28DRAFT_0258 0.39 +0.4 220,191 + EX28DRAFT_0258 0.46 +0.2 220,372 + EX28DRAFT_0258 0.57 -1.6 220,437 + EX28DRAFT_0258 0.61 -0.2 220,438 - EX28DRAFT_0258 0.61 -0.5 220,438 - EX28DRAFT_0258 0.61 +0.4 220,438 - EX28DRAFT_0258 0.61 -0.8 220,438 - EX28DRAFT_0258 0.61 -0.2 220,489 - EX28DRAFT_0258 0.64 +0.1 220,613 + EX28DRAFT_0258 0.72 +0.6 220,613 + EX28DRAFT_0258 0.72 -0.1 221,086 - -0.8 221,090 + -1.6 221,125 - +0.2 221,233 - -1.3 221,267 - +1.1 221,346 + EX28DRAFT_0259 0.14 +0.5 221,346 + EX28DRAFT_0259 0.14 -0.2 221,421 - EX28DRAFT_0259 0.18 +0.2 221,442 - EX28DRAFT_0259 0.19 -0.1 221,579 + EX28DRAFT_0259 0.27 +0.3 221,580 - EX28DRAFT_0259 0.27 +0.5 221,634 + EX28DRAFT_0259 0.30 +1.1 221,635 - EX28DRAFT_0259 0.30 -0.5 221,872 + EX28DRAFT_0259 0.44 +1.1 222,006 - EX28DRAFT_0259 0.52 -0.7 222,006 - EX28DRAFT_0259 0.52 -0.1 222,006 - EX28DRAFT_0259 0.52 -0.5 222,010 + EX28DRAFT_0259 0.52 -0.1 222,011 - EX28DRAFT_0259 0.52 -0.8 222,011 - EX28DRAFT_0259 0.52 +0.3 222,011 - EX28DRAFT_0259 0.52 -0.2
Or see this region's nucleotide sequence