Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0192

Experiment: MS_media with arsenate 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0191 and EX28DRAFT_0192 are separated by 142 nucleotidesEX28DRAFT_0192 and EX28DRAFT_0193 are separated by 152 nucleotides EX28DRAFT_0191: EX28DRAFT_0191 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 140,329 to 143,442 _0191 EX28DRAFT_0192: EX28DRAFT_0192 - Signal transduction histidine kinase, nitrate/nitrite-specific, at 143,585 to 145,279 _0192 EX28DRAFT_0193: EX28DRAFT_0193 - glutamate synthase small subunit family protein, proteobacterial, at 145,432 to 147,408 _0193 Position (kb) 143 144 145 146Strain fitness (log2 ratio) -2 -1 0 1 2at 142.939 kb on - strand, within EX28DRAFT_0191at 142.959 kb on + strand, within EX28DRAFT_0191at 142.959 kb on + strand, within EX28DRAFT_0191at 142.973 kb on + strand, within EX28DRAFT_0191at 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.213 kb on + strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.214 kb on - strandat 143.474 kb on + strandat 143.475 kb on - strandat 143.475 kb on - strandat 143.493 kb on - strandat 143.544 kb on + strandat 143.544 kb on + strandat 143.544 kb on + strandat 143.581 kb on - strandat 143.581 kb on - strandat 143.586 kb on + strandat 143.587 kb on - strandat 143.667 kb on - strandat 143.698 kb on + strandat 143.713 kb on - strandat 143.805 kb on - strand, within EX28DRAFT_0192at 144.435 kb on + strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192at 144.436 kb on - strand, within EX28DRAFT_0192at 144.449 kb on - strand, within EX28DRAFT_0192at 144.451 kb on - strand, within EX28DRAFT_0192at 144.451 kb on - strand, within EX28DRAFT_0192at 144.472 kb on + strand, within EX28DRAFT_0192at 144.610 kb on + strand, within EX28DRAFT_0192at 144.611 kb on - strand, within EX28DRAFT_0192at 144.694 kb on + strand, within EX28DRAFT_0192at 144.739 kb on + strand, within EX28DRAFT_0192at 145.022 kb on + strand, within EX28DRAFT_0192at 145.023 kb on - strand, within EX28DRAFT_0192at 145.150 kb on + strandat 145.151 kb on - strandat 145.226 kb on + strandat 145.228 kb on + strandat 145.229 kb on - strandat 145.324 kb on - strandat 145.377 kb on + strandat 145.377 kb on + strandat 145.377 kb on + strandat 145.381 kb on + strandat 145.382 kb on - strandat 145.393 kb on - strandat 145.393 kb on - strandat 145.443 kb on + strandat 145.444 kb on - strandat 145.671 kb on - strand, within EX28DRAFT_0193at 145.702 kb on - strand, within EX28DRAFT_0193at 145.885 kb on - strand, within EX28DRAFT_0193

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
remove
142,939 - EX28DRAFT_0191 0.84 -0.1
142,959 + EX28DRAFT_0191 0.84 +0.4
142,959 + EX28DRAFT_0191 0.84 -0.2
142,973 + EX28DRAFT_0191 0.85 -1.4
143,213 + +0.2
143,213 + +0.2
143,213 + +0.1
143,213 + +0.8
143,213 + +0.0
143,214 - +0.4
143,214 - +0.4
143,214 - -0.4
143,214 - +0.0
143,214 - -0.2
143,474 + +0.3
143,475 - +0.5
143,475 - -0.2
143,493 - +0.1
143,544 + +0.4
143,544 + +0.1
143,544 + +0.4
143,581 - +0.1
143,581 - +0.9
143,586 + +0.4
143,587 - -0.0
143,667 - +0.1
143,698 + -0.1
143,713 - +2.3
143,805 - EX28DRAFT_0192 0.13 +0.7
144,435 + EX28DRAFT_0192 0.50 -0.5
144,436 - EX28DRAFT_0192 0.50 -0.0
144,436 - EX28DRAFT_0192 0.50 -0.5
144,449 - EX28DRAFT_0192 0.51 -0.1
144,451 - EX28DRAFT_0192 0.51 +0.3
144,451 - EX28DRAFT_0192 0.51 +0.5
144,472 + EX28DRAFT_0192 0.52 -0.2
144,610 + EX28DRAFT_0192 0.60 +0.1
144,611 - EX28DRAFT_0192 0.61 +0.1
144,694 + EX28DRAFT_0192 0.65 +0.2
144,739 + EX28DRAFT_0192 0.68 +0.4
145,022 + EX28DRAFT_0192 0.85 +0.1
145,023 - EX28DRAFT_0192 0.85 +0.4
145,150 + +0.6
145,151 - -0.2
145,226 + +0.3
145,228 + -0.4
145,229 - -0.1
145,324 - -0.6
145,377 + +0.1
145,377 + +0.4
145,377 + -0.1
145,381 + -0.3
145,382 - -0.7
145,393 - -0.9
145,393 - -1.9
145,443 + -0.1
145,444 - -2.1
145,671 - EX28DRAFT_0193 0.12 +0.2
145,702 - EX28DRAFT_0193 0.14 -0.4
145,885 - EX28DRAFT_0193 0.23 -0.9

Or see this region's nucleotide sequence