Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0094

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0092 and EX28DRAFT_0093 are separated by 291 nucleotidesEX28DRAFT_0093 and EX28DRAFT_0094 are separated by 96 nucleotidesEX28DRAFT_0094 and EX28DRAFT_0095 are separated by 1 nucleotidesEX28DRAFT_0095 and EX28DRAFT_0096 overlap by 14 nucleotides EX28DRAFT_0092: EX28DRAFT_0092 - phosphoribosylformylglycinamidine synthase, single chain form, at 30,392 to 34,279 _0092 EX28DRAFT_0093: EX28DRAFT_0093 - RNA, at 34,571 to 34,717 _0093 EX28DRAFT_0094: EX28DRAFT_0094 - Signal transduction histidine kinase, at 34,814 to 36,241 _0094 EX28DRAFT_0095: EX28DRAFT_0095 - YfhG lipoprotein, at 36,243 to 36,980 _0095 EX28DRAFT_0096: EX28DRAFT_0096 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 36,967 to 38,304 _0096 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 34.409 kb on + strandat 34.444 kb on + strandat 34.445 kb on - strandat 34.458 kb on - strandat 34.590 kb on + strand, within EX28DRAFT_0093at 34.591 kb on - strand, within EX28DRAFT_0093at 34.591 kb on - strand, within EX28DRAFT_0093at 34.615 kb on - strand, within EX28DRAFT_0093at 34.618 kb on + strand, within EX28DRAFT_0093at 34.619 kb on - strand, within EX28DRAFT_0093at 34.659 kb on + strand, within EX28DRAFT_0093at 34.659 kb on + strand, within EX28DRAFT_0093at 34.660 kb on - strand, within EX28DRAFT_0093at 34.660 kb on - strand, within EX28DRAFT_0093at 34.679 kb on + strand, within EX28DRAFT_0093at 34.705 kb on + strandat 34.756 kb on + strandat 34.808 kb on - strandat 35.023 kb on + strand, within EX28DRAFT_0094at 35.023 kb on + strand, within EX28DRAFT_0094at 35.023 kb on + strand, within EX28DRAFT_0094at 35.023 kb on + strand, within EX28DRAFT_0094at 35.027 kb on + strand, within EX28DRAFT_0094at 35.027 kb on + strand, within EX28DRAFT_0094at 35.028 kb on - strand, within EX28DRAFT_0094at 35.028 kb on - strand, within EX28DRAFT_0094at 35.054 kb on - strand, within EX28DRAFT_0094at 35.072 kb on + strand, within EX28DRAFT_0094at 35.073 kb on - strand, within EX28DRAFT_0094at 35.086 kb on + strand, within EX28DRAFT_0094at 35.431 kb on + strand, within EX28DRAFT_0094at 35.432 kb on - strand, within EX28DRAFT_0094at 35.508 kb on + strand, within EX28DRAFT_0094at 35.509 kb on - strand, within EX28DRAFT_0094at 35.509 kb on - strand, within EX28DRAFT_0094at 35.522 kb on - strand, within EX28DRAFT_0094at 35.596 kb on + strand, within EX28DRAFT_0094at 35.745 kb on - strand, within EX28DRAFT_0094at 35.746 kb on + strand, within EX28DRAFT_0094at 35.828 kb on - strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.845 kb on + strand, within EX28DRAFT_0094at 35.899 kb on + strand, within EX28DRAFT_0094at 35.899 kb on + strand, within EX28DRAFT_0094at 35.931 kb on - strand, within EX28DRAFT_0094at 35.972 kb on + strand, within EX28DRAFT_0094at 35.972 kb on + strand, within EX28DRAFT_0094at 35.973 kb on - strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 35.986 kb on + strand, within EX28DRAFT_0094at 36.007 kb on + strand, within EX28DRAFT_0094at 36.008 kb on - strand, within EX28DRAFT_0094at 36.168 kb on + strandat 36.168 kb on + strandat 36.250 kb on + strandat 36.251 kb on - strandat 36.263 kb on + strandat 36.264 kb on - strandat 36.398 kb on + strand, within EX28DRAFT_0095at 36.398 kb on + strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.399 kb on - strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.666 kb on + strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.801 kb on - strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.826 kb on + strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 36.831 kb on - strand, within EX28DRAFT_0095at 37.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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34,409 + +0.9
34,444 + +0.1
34,445 - -0.4
34,458 - -1.1
34,590 + EX28DRAFT_0093 0.13 +0.4
34,591 - EX28DRAFT_0093 0.14 -0.9
34,591 - EX28DRAFT_0093 0.14 -1.1
34,615 - EX28DRAFT_0093 0.30 -0.5
34,618 + EX28DRAFT_0093 0.32 +0.1
34,619 - EX28DRAFT_0093 0.33 -0.0
34,659 + EX28DRAFT_0093 0.60 +0.1
34,659 + EX28DRAFT_0093 0.60 +0.6
34,660 - EX28DRAFT_0093 0.61 +0.4
34,660 - EX28DRAFT_0093 0.61 +1.0
34,679 + EX28DRAFT_0093 0.73 +0.4
34,705 + +0.3
34,756 + -0.2
34,808 - +0.6
35,023 + EX28DRAFT_0094 0.15 +0.6
35,023 + EX28DRAFT_0094 0.15 +0.9
35,023 + EX28DRAFT_0094 0.15 +0.2
35,023 + EX28DRAFT_0094 0.15 +0.5
35,027 + EX28DRAFT_0094 0.15 -0.3
35,027 + EX28DRAFT_0094 0.15 +0.5
35,028 - EX28DRAFT_0094 0.15 +0.5
35,028 - EX28DRAFT_0094 0.15 -0.2
35,054 - EX28DRAFT_0094 0.17 +0.8
35,072 + EX28DRAFT_0094 0.18 +0.3
35,073 - EX28DRAFT_0094 0.18 +0.9
35,086 + EX28DRAFT_0094 0.19 +0.5
35,431 + EX28DRAFT_0094 0.43 -0.4
35,432 - EX28DRAFT_0094 0.43 +1.0
35,508 + EX28DRAFT_0094 0.49 -0.5
35,509 - EX28DRAFT_0094 0.49 +0.3
35,509 - EX28DRAFT_0094 0.49 +0.6
35,522 - EX28DRAFT_0094 0.50 +1.1
35,596 + EX28DRAFT_0094 0.55 +0.2
35,745 - EX28DRAFT_0094 0.65 +0.5
35,746 + EX28DRAFT_0094 0.65 -0.0
35,828 - EX28DRAFT_0094 0.71 +0.9
35,845 + EX28DRAFT_0094 0.72 -0.2
35,845 + EX28DRAFT_0094 0.72 +0.2
35,845 + EX28DRAFT_0094 0.72 -0.2
35,899 + EX28DRAFT_0094 0.76 +0.7
35,899 + EX28DRAFT_0094 0.76 +1.9
35,931 - EX28DRAFT_0094 0.78 +0.1
35,972 + EX28DRAFT_0094 0.81 +0.2
35,972 + EX28DRAFT_0094 0.81 +1.2
35,973 - EX28DRAFT_0094 0.81 +0.2
35,986 + EX28DRAFT_0094 0.82 +0.3
35,986 + EX28DRAFT_0094 0.82 -0.1
36,007 + EX28DRAFT_0094 0.84 -0.5
36,008 - EX28DRAFT_0094 0.84 -0.3
36,168 + -0.4
36,168 + +0.1
36,250 + +0.0
36,251 - +1.9
36,263 + -1.4
36,264 - +0.6
36,398 + EX28DRAFT_0095 0.21 +1.0
36,398 + EX28DRAFT_0095 0.21 +0.3
36,399 - EX28DRAFT_0095 0.21 -0.1
36,399 - EX28DRAFT_0095 0.21 +0.2
36,666 + EX28DRAFT_0095 0.57 -1.1
36,666 + EX28DRAFT_0095 0.57 +0.8
36,666 + EX28DRAFT_0095 0.57 +0.5
36,666 + EX28DRAFT_0095 0.57 +0.2
36,666 + EX28DRAFT_0095 0.57 +0.6
36,801 - EX28DRAFT_0095 0.76 +0.4
36,801 - EX28DRAFT_0095 0.76 +0.9
36,826 + EX28DRAFT_0095 0.79 +0.1
36,826 + EX28DRAFT_0095 0.79 -0.0
36,831 - EX28DRAFT_0095 0.80 +1.9
36,831 - EX28DRAFT_0095 0.80 +0.3
37,023 - +0.4

Or see this region's nucleotide sequence