Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0069

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0067 and EX28DRAFT_0068 are separated by 313 nucleotidesEX28DRAFT_0068 and EX28DRAFT_0069 are separated by 50 nucleotidesEX28DRAFT_0069 and EX28DRAFT_0070 are separated by 11 nucleotidesEX28DRAFT_0070 and EX28DRAFT_0071 overlap by 16 nucleotides EX28DRAFT_0067: EX28DRAFT_0067 - Uracil-DNA glycosylase (EC 3.2.2.-), at 8,910 to 9,599 _0067 EX28DRAFT_0068: EX28DRAFT_0068 - autonomous glycyl radical cofactor GrcA, at 9,913 to 10,296 _0068 EX28DRAFT_0069: EX28DRAFT_0069 - Superfamily II DNA and RNA helicases, at 10,347 to 11,675 _0069 EX28DRAFT_0070: EX28DRAFT_0070 - Predicted O-methyltransferase, at 11,687 to 12,545 _0070 EX28DRAFT_0071: EX28DRAFT_0071 - L-aspartate oxidase (EC 1.4.3.16), at 12,530 to 14,149 _0071 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 9.539 kb on + strandat 9.540 kb on - strandat 9.544 kb on + strandat 9.545 kb on - strandat 9.631 kb on - strandat 9.635 kb on + strandat 9.830 kb on + strandat 9.830 kb on + strandat 9.831 kb on - strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.832 kb on + strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.833 kb on - strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.834 kb on + strandat 9.835 kb on - strandat 9.836 kb on + strandat 9.889 kb on + strandat 9.889 kb on + strandat 9.890 kb on - strandat 9.890 kb on - strandat 9.895 kb on - strandat 9.918 kb on + strandat 9.919 kb on - strandat 10.072 kb on + strand, within EX28DRAFT_0068at 10.137 kb on - strand, within EX28DRAFT_0068at 10.275 kb on + strandat 10.403 kb on + strandat 10.682 kb on - strand, within EX28DRAFT_0069at 11.370 kb on - strand, within EX28DRAFT_0069at 11.681 kb on - strandat 11.681 kb on - strandat 11.702 kb on + strandat 11.703 kb on - strandat 11.704 kb on + strandat 11.704 kb on + strandat 11.704 kb on + strandat 11.705 kb on - strandat 11.720 kb on - strandat 11.736 kb on + strandat 11.737 kb on - strandat 11.737 kb on - strandat 11.771 kb on + strandat 11.771 kb on + strandat 11.792 kb on - strand, within EX28DRAFT_0070at 11.792 kb on - strand, within EX28DRAFT_0070at 11.948 kb on + strand, within EX28DRAFT_0070at 11.948 kb on + strand, within EX28DRAFT_0070at 11.949 kb on - strand, within EX28DRAFT_0070at 12.072 kb on - strand, within EX28DRAFT_0070at 12.231 kb on + strand, within EX28DRAFT_0070at 12.231 kb on + strand, within EX28DRAFT_0070at 12.232 kb on - strand, within EX28DRAFT_0070at 12.233 kb on + strand, within EX28DRAFT_0070at 12.252 kb on - strand, within EX28DRAFT_0070at 12.386 kb on + strand, within EX28DRAFT_0070at 12.386 kb on + strand, within EX28DRAFT_0070at 12.507 kb on + strandat 12.539 kb on + strandat 12.539 kb on + strandat 12.543 kb on + strandat 12.543 kb on + strandat 12.544 kb on - strandat 12.604 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.606 kb on + strandat 12.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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9,539 + +0.0
9,540 - -0.1
9,544 + +0.3
9,545 - +0.7
9,631 - +1.2
9,635 + -2.0
9,830 + +0.4
9,830 + -0.4
9,831 - +0.3
9,832 + -2.3
9,832 + -0.0
9,832 + -0.4
9,832 + +0.1
9,832 + -2.0
9,832 + -1.5
9,832 + -0.3
9,832 + +0.7
9,833 - +0.4
9,833 - +0.3
9,833 - +0.0
9,834 + -0.1
9,834 + -0.3
9,834 + +0.0
9,835 - +0.2
9,836 + +1.9
9,889 + +0.2
9,889 + +1.7
9,890 - -2.6
9,890 - +0.2
9,895 - +0.9
9,918 + -0.2
9,919 - -0.1
10,072 + EX28DRAFT_0068 0.41 +0.4
10,137 - EX28DRAFT_0068 0.58 -2.3
10,275 + -1.6
10,403 + +1.2
10,682 - EX28DRAFT_0069 0.25 +1.3
11,370 - EX28DRAFT_0069 0.77 -0.9
11,681 - +0.7
11,681 - +0.1
11,702 + -0.2
11,703 - -1.1
11,704 + +0.6
11,704 + +0.7
11,704 + +0.7
11,705 - -0.2
11,720 - -1.3
11,736 + -0.2
11,737 - -0.2
11,737 - -1.2
11,771 + +0.1
11,771 + +0.7
11,792 - EX28DRAFT_0070 0.12 -1.4
11,792 - EX28DRAFT_0070 0.12 -0.0
11,948 + EX28DRAFT_0070 0.30 -0.8
11,948 + EX28DRAFT_0070 0.30 +0.2
11,949 - EX28DRAFT_0070 0.31 +0.1
12,072 - EX28DRAFT_0070 0.45 -0.0
12,231 + EX28DRAFT_0070 0.63 -0.1
12,231 + EX28DRAFT_0070 0.63 +0.2
12,232 - EX28DRAFT_0070 0.63 -0.7
12,233 + EX28DRAFT_0070 0.64 -0.2
12,252 - EX28DRAFT_0070 0.66 +0.1
12,386 + EX28DRAFT_0070 0.81 +0.2
12,386 + EX28DRAFT_0070 0.81 +0.9
12,507 + +0.5
12,539 + -0.3
12,539 + +0.2
12,543 + -0.1
12,543 + +0.8
12,544 - -0.2
12,604 + -0.0
12,606 + +0.1
12,606 + -0.5
12,606 + +0.1
12,606 + +0.6
12,628 + +0.4

Or see this region's nucleotide sequence