Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14540 and CA264_14545 are separated by 0 nucleotides CA264_14545 and CA264_14550 are separated by 72 nucleotides
CA264_14540: CA264_14540 - NADP-dependent malic enzyme, at 3,411,501 to 3,413,771
_14540
CA264_14545: CA264_14545 - Holliday junction branch migration protein RuvA, at 3,413,772 to 3,414,362
_14545
CA264_14550: CA264_14550 - cell surface protein SprA, at 3,414,435 to 3,421,562
_14550
Position (kb)
3413
3414
3415 Strain fitness (log2 ratio)
-1
0
1
2 at 3412.848 kb on + strand, within CA264_14540 at 3412.856 kb on - strand, within CA264_14540 at 3413.105 kb on + strand, within CA264_14540 at 3413.195 kb on - strand, within CA264_14540 at 3413.195 kb on - strand, within CA264_14540 at 3413.233 kb on - strand, within CA264_14540 at 3413.259 kb on + strand, within CA264_14540 at 3413.260 kb on - strand, within CA264_14540 at 3413.281 kb on + strand, within CA264_14540 at 3413.382 kb on + strand, within CA264_14540 at 3413.674 kb on + strand at 3413.752 kb on - strand at 3413.756 kb on + strand at 3413.757 kb on - strand at 3413.765 kb on + strand at 3413.765 kb on + strand at 3413.769 kb on + strand at 3414.367 kb on + strand at 3414.367 kb on + strand at 3414.367 kb on + strand at 3414.368 kb on - strand at 3414.368 kb on - strand at 3414.369 kb on + strand at 3414.370 kb on - strand at 3414.428 kb on + strand at 3414.428 kb on + strand at 3414.517 kb on + strand at 3414.517 kb on + strand at 3414.518 kb on - strand at 3414.518 kb on - strand at 3414.549 kb on + strand at 3414.549 kb on + strand at 3414.549 kb on + strand at 3414.550 kb on - strand at 3414.550 kb on - strand at 3414.550 kb on - strand at 3414.551 kb on + strand at 3414.637 kb on + strand at 3414.661 kb on + strand at 3414.661 kb on + strand at 3414.662 kb on - strand at 3414.696 kb on - strand at 3414.724 kb on + strand at 3414.724 kb on + strand at 3414.747 kb on - strand at 3414.910 kb on - strand at 3414.910 kb on - strand at 3414.913 kb on + strand at 3414.913 kb on + strand at 3414.992 kb on + strand at 3415.052 kb on + strand at 3415.082 kb on + strand at 3415.134 kb on + strand at 3415.135 kb on - strand at 3415.157 kb on + strand, within CA264_14550 at 3415.157 kb on + strand, within CA264_14550 at 3415.157 kb on + strand, within CA264_14550 at 3415.159 kb on + strand, within CA264_14550 at 3415.159 kb on + strand, within CA264_14550 at 3415.159 kb on + strand, within CA264_14550 at 3415.184 kb on - strand, within CA264_14550 at 3415.237 kb on + strand, within CA264_14550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 3,412,848 + CA264_14540 0.59 -1.2 3,412,856 - CA264_14540 0.60 -1.5 3,413,105 + CA264_14540 0.71 -0.6 3,413,195 - CA264_14540 0.75 +0.2 3,413,195 - CA264_14540 0.75 -0.7 3,413,233 - CA264_14540 0.76 -1.6 3,413,259 + CA264_14540 0.77 -0.4 3,413,260 - CA264_14540 0.77 -1.1 3,413,281 + CA264_14540 0.78 -0.1 3,413,382 + CA264_14540 0.83 -0.1 3,413,674 + -1.6 3,413,752 - -0.5 3,413,756 + -0.8 3,413,757 - -0.2 3,413,765 + -0.3 3,413,765 + -0.9 3,413,769 + -1.5 3,414,367 + -0.1 3,414,367 + +1.2 3,414,367 + +0.3 3,414,368 - +0.8 3,414,368 - +0.3 3,414,369 + -0.3 3,414,370 - -0.4 3,414,428 + +0.8 3,414,428 + +1.4 3,414,517 + +0.9 3,414,517 + +1.0 3,414,518 - -1.1 3,414,518 - +1.0 3,414,549 + +1.7 3,414,549 + +0.9 3,414,549 + +1.9 3,414,550 - +1.6 3,414,550 - +1.2 3,414,550 - +0.2 3,414,551 + +1.1 3,414,637 + +1.0 3,414,661 + +1.8 3,414,661 + +1.2 3,414,662 - +1.2 3,414,696 - +0.9 3,414,724 + +0.2 3,414,724 + +1.0 3,414,747 - +1.0 3,414,910 - +1.4 3,414,910 - +1.6 3,414,913 + +2.6 3,414,913 + +1.3 3,414,992 + +0.5 3,415,052 + +1.6 3,415,082 + +1.2 3,415,134 + +0.8 3,415,135 - +1.7 3,415,157 + CA264_14550 0.10 +1.5 3,415,157 + CA264_14550 0.10 +1.5 3,415,157 + CA264_14550 0.10 +1.0 3,415,159 + CA264_14550 0.10 +1.7 3,415,159 + CA264_14550 0.10 +1.0 3,415,159 + CA264_14550 0.10 +1.2 3,415,184 - CA264_14550 0.11 +1.2 3,415,237 + CA264_14550 0.11 +1.9
Or see this region's nucleotide sequence