Experiment: m.b. nitrite 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13755 and CA264_13760 are separated by 301 nucleotides CA264_13760 and CA264_13765 are separated by 366 nucleotides
CA264_13755: CA264_13755 - cystathionine beta-synthase, at 3,213,808 to 3,214,791
_13755
CA264_13760: CA264_13760 - succinate--CoA ligase subunit alpha, at 3,215,093 to 3,215,983
_13760
CA264_13765: CA264_13765 - DNA-binding transcriptional regulator OxyR, at 3,216,350 to 3,217,294
_13765
Position (kb)
3215
3216 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3214.169 kb on + strand, within CA264_13755 at 3214.410 kb on - strand, within CA264_13755 at 3214.726 kb on + strand at 3214.755 kb on + strand at 3214.804 kb on - strand at 3214.822 kb on + strand at 3214.831 kb on + strand at 3214.995 kb on - strand at 3214.996 kb on + strand at 3214.997 kb on - strand at 3215.000 kb on - strand at 3215.009 kb on + strand at 3215.049 kb on - strand at 3215.054 kb on - strand at 3215.054 kb on - strand at 3215.054 kb on - strand at 3215.070 kb on + strand at 3215.070 kb on + strand at 3215.972 kb on - strand at 3215.982 kb on - strand at 3215.982 kb on - strand at 3215.982 kb on - strand at 3215.995 kb on - strand at 3215.995 kb on - strand at 3216.001 kb on + strand at 3216.053 kb on - strand at 3216.053 kb on - strand at 3216.131 kb on - strand at 3216.131 kb on - strand at 3216.131 kb on - strand at 3216.131 kb on - strand at 3216.131 kb on - strand at 3216.131 kb on - strand at 3216.134 kb on + strand at 3216.192 kb on - strand at 3216.203 kb on - strand at 3216.206 kb on + strand at 3216.272 kb on + strand at 3216.272 kb on + strand at 3216.272 kb on + strand at 3216.281 kb on + strand at 3216.281 kb on + strand at 3216.288 kb on + strand at 3216.411 kb on - strand at 3216.412 kb on + strand at 3216.622 kb on + strand, within CA264_13765 at 3216.622 kb on + strand, within CA264_13765 at 3216.752 kb on + strand, within CA264_13765 at 3216.792 kb on + strand, within CA264_13765 at 3216.792 kb on + strand, within CA264_13765 at 3216.792 kb on + strand, within CA264_13765 at 3216.810 kb on + strand, within CA264_13765 at 3216.896 kb on + strand, within CA264_13765
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM remove 3,214,169 + CA264_13755 0.37 -1.6 3,214,410 - CA264_13755 0.61 -3.7 3,214,726 + -1.6 3,214,755 + -1.3 3,214,804 - -0.0 3,214,822 + +0.2 3,214,831 + +0.2 3,214,995 - -0.4 3,214,996 + +0.1 3,214,997 - -0.3 3,215,000 - -0.1 3,215,009 + +1.8 3,215,049 - -0.0 3,215,054 - -0.3 3,215,054 - +0.2 3,215,054 - +0.5 3,215,070 + +0.3 3,215,070 + -0.3 3,215,972 - +0.6 3,215,982 - -0.0 3,215,982 - -0.3 3,215,982 - +1.7 3,215,995 - +0.3 3,215,995 - +0.0 3,216,001 + -0.2 3,216,053 - -0.6 3,216,053 - +0.3 3,216,131 - +2.2 3,216,131 - -0.3 3,216,131 - -0.2 3,216,131 - -0.6 3,216,131 - -0.3 3,216,131 - -0.8 3,216,134 + +2.5 3,216,192 - -0.3 3,216,203 - +0.1 3,216,206 + -0.9 3,216,272 + +0.3 3,216,272 + +1.3 3,216,272 + -0.1 3,216,281 + -1.1 3,216,281 + +1.0 3,216,288 + +2.1 3,216,411 - +0.2 3,216,412 + -0.6 3,216,622 + CA264_13765 0.29 +0.2 3,216,622 + CA264_13765 0.29 +0.2 3,216,752 + CA264_13765 0.43 -1.2 3,216,792 + CA264_13765 0.47 -0.2 3,216,792 + CA264_13765 0.47 -0.0 3,216,792 + CA264_13765 0.47 +0.4 3,216,810 + CA264_13765 0.49 -0.3 3,216,896 + CA264_13765 0.58 +0.3
Or see this region's nucleotide sequence