Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06855

Experiment: m.b. nitrite 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06845 and CA264_06850 are separated by 17 nucleotidesCA264_06850 and CA264_06855 are separated by 72 nucleotidesCA264_06855 and CA264_06860 are separated by 30 nucleotidesCA264_06860 and CA264_06865 are separated by 267 nucleotides CA264_06845: CA264_06845 - hypothetical protein, at 1,583,208 to 1,583,666 _06845 CA264_06850: CA264_06850 - hypothetical protein, at 1,583,684 to 1,584,280 _06850 CA264_06855: CA264_06855 - nitrous oxide reductase, at 1,584,353 to 1,586,380 _06855 CA264_06860: CA264_06860 - cytochrome C, at 1,586,411 to 1,586,911 _06860 CA264_06865: CA264_06865 - hypothetical protein, at 1,587,179 to 1,587,499 _06865 Position (kb) 1584 1585 1586 1587Strain fitness (log2 ratio) -2 -1 0 1 2at 1583.396 kb on + strand, within CA264_06845at 1583.397 kb on - strand, within CA264_06845at 1583.405 kb on + strand, within CA264_06845at 1583.590 kb on - strand, within CA264_06845at 1583.590 kb on - strand, within CA264_06845at 1583.637 kb on + strandat 1583.638 kb on - strandat 1583.640 kb on - strandat 1583.657 kb on - strandat 1583.750 kb on + strand, within CA264_06850at 1583.750 kb on + strand, within CA264_06850at 1583.751 kb on - strand, within CA264_06850at 1583.752 kb on + strand, within CA264_06850at 1583.753 kb on - strand, within CA264_06850at 1583.766 kb on - strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.767 kb on + strand, within CA264_06850at 1583.768 kb on - strand, within CA264_06850at 1583.771 kb on + strand, within CA264_06850at 1583.772 kb on - strand, within CA264_06850at 1583.773 kb on + strand, within CA264_06850at 1583.773 kb on + strand, within CA264_06850at 1583.774 kb on - strand, within CA264_06850at 1583.844 kb on + strand, within CA264_06850at 1583.863 kb on + strand, within CA264_06850at 1583.863 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.913 kb on + strand, within CA264_06850at 1583.914 kb on - strand, within CA264_06850at 1583.921 kb on + strand, within CA264_06850at 1583.986 kb on + strand, within CA264_06850at 1584.015 kb on - strand, within CA264_06850at 1584.042 kb on + strand, within CA264_06850at 1584.043 kb on - strand, within CA264_06850at 1584.056 kb on - strand, within CA264_06850at 1584.090 kb on + strand, within CA264_06850at 1584.121 kb on + strand, within CA264_06850at 1584.124 kb on - strand, within CA264_06850at 1584.287 kb on - strandat 1584.299 kb on + strandat 1584.300 kb on - strandat 1584.416 kb on + strandat 1584.416 kb on + strandat 1584.416 kb on + strandat 1584.424 kb on + strandat 1584.424 kb on + strandat 1584.426 kb on + strandat 1584.427 kb on - strandat 1584.427 kb on - strandat 1584.427 kb on - strandat 1584.472 kb on - strandat 1584.472 kb on - strandat 1584.618 kb on + strand, within CA264_06855at 1584.620 kb on + strand, within CA264_06855at 1584.620 kb on + strand, within CA264_06855at 1584.638 kb on + strand, within CA264_06855at 1584.640 kb on + strand, within CA264_06855at 1584.640 kb on + strand, within CA264_06855at 1584.688 kb on - strand, within CA264_06855at 1584.688 kb on - strand, within CA264_06855at 1584.695 kb on + strand, within CA264_06855at 1584.695 kb on + strand, within CA264_06855at 1584.696 kb on - strand, within CA264_06855at 1584.696 kb on - strand, within CA264_06855at 1584.747 kb on + strand, within CA264_06855at 1584.748 kb on - strand, within CA264_06855at 1584.748 kb on - strand, within CA264_06855at 1584.825 kb on + strand, within CA264_06855at 1584.825 kb on + strand, within CA264_06855at 1584.988 kb on + strand, within CA264_06855at 1585.027 kb on - strand, within CA264_06855at 1585.027 kb on - strand, within CA264_06855at 1585.046 kb on + strand, within CA264_06855at 1585.046 kb on + strand, within CA264_06855at 1585.097 kb on - strand, within CA264_06855at 1585.097 kb on - strand, within CA264_06855at 1585.097 kb on - strand, within CA264_06855at 1585.104 kb on + strand, within CA264_06855at 1585.237 kb on + strand, within CA264_06855at 1585.237 kb on + strand, within CA264_06855at 1585.273 kb on + strand, within CA264_06855at 1585.305 kb on + strand, within CA264_06855at 1585.306 kb on - strand, within CA264_06855at 1585.306 kb on - strand, within CA264_06855at 1585.306 kb on - strand, within CA264_06855at 1585.306 kb on - strand, within CA264_06855at 1585.323 kb on - strand, within CA264_06855at 1585.346 kb on - strand, within CA264_06855at 1585.363 kb on - strand, within CA264_06855at 1585.363 kb on - strand, within CA264_06855at 1585.458 kb on + strand, within CA264_06855at 1585.459 kb on - strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.461 kb on + strand, within CA264_06855at 1585.464 kb on + strand, within CA264_06855at 1585.505 kb on + strand, within CA264_06855at 1585.596 kb on + strand, within CA264_06855at 1585.597 kb on - strand, within CA264_06855at 1585.597 kb on - strand, within CA264_06855at 1585.654 kb on - strand, within CA264_06855at 1585.752 kb on + strand, within CA264_06855at 1585.777 kb on - strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1585.833 kb on + strand, within CA264_06855at 1586.076 kb on + strand, within CA264_06855at 1586.148 kb on + strand, within CA264_06855at 1586.149 kb on - strand, within CA264_06855at 1586.182 kb on + strandat 1586.182 kb on + strandat 1586.183 kb on - strandat 1586.183 kb on - strandat 1586.183 kb on - strandat 1586.188 kb on + strandat 1586.188 kb on + strandat 1586.188 kb on + strandat 1586.189 kb on - strandat 1586.189 kb on - strandat 1586.189 kb on - strandat 1586.190 kb on + strandat 1586.191 kb on - strandat 1586.220 kb on + strandat 1586.290 kb on + strandat 1586.369 kb on + strandat 1586.621 kb on + strand, within CA264_06860at 1586.702 kb on + strand, within CA264_06860at 1586.702 kb on + strand, within CA264_06860at 1586.721 kb on - strand, within CA264_06860at 1586.812 kb on - strand, within CA264_06860at 1586.895 kb on - strandat 1586.911 kb on + strandat 1586.912 kb on - strandat 1586.972 kb on - strandat 1587.150 kb on + strandat 1587.151 kb on - strandat 1587.193 kb on + strandat 1587.193 kb on + strandat 1587.193 kb on + strandat 1587.224 kb on + strand, within CA264_06865at 1587.226 kb on + strand, within CA264_06865at 1587.226 kb on + strand, within CA264_06865at 1587.227 kb on - strand, within CA264_06865at 1587.236 kb on + strand, within CA264_06865at 1587.236 kb on + strand, within CA264_06865at 1587.287 kb on + strand, within CA264_06865at 1587.291 kb on + strand, within CA264_06865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
remove
1,583,396 + CA264_06845 0.41 +1.0
1,583,397 - CA264_06845 0.41 -0.1
1,583,405 + CA264_06845 0.43 +0.1
1,583,590 - CA264_06845 0.83 -1.3
1,583,590 - CA264_06845 0.83 +0.1
1,583,637 + +1.1
1,583,638 - +0.4
1,583,640 - -0.7
1,583,657 - +0.4
1,583,750 + CA264_06850 0.11 +0.8
1,583,750 + CA264_06850 0.11 -1.3
1,583,751 - CA264_06850 0.11 -0.1
1,583,752 + CA264_06850 0.11 +0.5
1,583,753 - CA264_06850 0.12 +0.3
1,583,766 - CA264_06850 0.14 -0.7
1,583,767 + CA264_06850 0.14 +0.8
1,583,767 + CA264_06850 0.14 -0.1
1,583,767 + CA264_06850 0.14 -1.0
1,583,768 - CA264_06850 0.14 +0.6
1,583,771 + CA264_06850 0.15 +0.1
1,583,772 - CA264_06850 0.15 +0.3
1,583,773 + CA264_06850 0.15 +0.2
1,583,773 + CA264_06850 0.15 +0.1
1,583,774 - CA264_06850 0.15 -0.6
1,583,844 + CA264_06850 0.27 -0.0
1,583,863 + CA264_06850 0.30 +0.8
1,583,863 + CA264_06850 0.30 +0.5
1,583,913 + CA264_06850 0.38 -0.7
1,583,913 + CA264_06850 0.38 -0.5
1,583,913 + CA264_06850 0.38 +0.3
1,583,914 - CA264_06850 0.39 +0.5
1,583,921 + CA264_06850 0.40 +0.0
1,583,986 + CA264_06850 0.51 +2.2
1,584,015 - CA264_06850 0.55 -0.3
1,584,042 + CA264_06850 0.60 +0.8
1,584,043 - CA264_06850 0.60 +0.2
1,584,056 - CA264_06850 0.62 +0.1
1,584,090 + CA264_06850 0.68 -0.0
1,584,121 + CA264_06850 0.73 -0.9
1,584,124 - CA264_06850 0.74 -0.0
1,584,287 - +0.2
1,584,299 + +0.1
1,584,300 - -0.6
1,584,416 + -0.2
1,584,416 + +0.5
1,584,416 + -0.2
1,584,424 + +0.6
1,584,424 + +1.5
1,584,426 + +0.9
1,584,427 - +0.2
1,584,427 - -0.7
1,584,427 - -0.3
1,584,472 - -0.7
1,584,472 - +0.4
1,584,618 + CA264_06855 0.13 -0.0
1,584,620 + CA264_06855 0.13 -1.1
1,584,620 + CA264_06855 0.13 +0.4
1,584,638 + CA264_06855 0.14 +0.4
1,584,640 + CA264_06855 0.14 -0.1
1,584,640 + CA264_06855 0.14 +0.2
1,584,688 - CA264_06855 0.17 -0.1
1,584,688 - CA264_06855 0.17 +0.7
1,584,695 + CA264_06855 0.17 +0.1
1,584,695 + CA264_06855 0.17 -0.2
1,584,696 - CA264_06855 0.17 -0.1
1,584,696 - CA264_06855 0.17 +0.0
1,584,747 + CA264_06855 0.19 -0.5
1,584,748 - CA264_06855 0.19 -0.7
1,584,748 - CA264_06855 0.19 -0.1
1,584,825 + CA264_06855 0.23 +0.5
1,584,825 + CA264_06855 0.23 -0.7
1,584,988 + CA264_06855 0.31 +0.6
1,585,027 - CA264_06855 0.33 +0.6
1,585,027 - CA264_06855 0.33 -0.6
1,585,046 + CA264_06855 0.34 +0.3
1,585,046 + CA264_06855 0.34 +1.5
1,585,097 - CA264_06855 0.37 +0.0
1,585,097 - CA264_06855 0.37 -0.1
1,585,097 - CA264_06855 0.37 +0.3
1,585,104 + CA264_06855 0.37 +0.8
1,585,237 + CA264_06855 0.44 +0.3
1,585,237 + CA264_06855 0.44 +0.6
1,585,273 + CA264_06855 0.45 -0.1
1,585,305 + CA264_06855 0.47 +0.1
1,585,306 - CA264_06855 0.47 -1.0
1,585,306 - CA264_06855 0.47 -0.1
1,585,306 - CA264_06855 0.47 -0.2
1,585,306 - CA264_06855 0.47 -0.2
1,585,323 - CA264_06855 0.48 -0.7
1,585,346 - CA264_06855 0.49 +0.9
1,585,363 - CA264_06855 0.50 -0.3
1,585,363 - CA264_06855 0.50 -0.0
1,585,458 + CA264_06855 0.54 +1.2
1,585,459 - CA264_06855 0.55 +0.0
1,585,461 + CA264_06855 0.55 -0.5
1,585,461 + CA264_06855 0.55 +0.3
1,585,461 + CA264_06855 0.55 -0.1
1,585,461 + CA264_06855 0.55 +0.0
1,585,464 + CA264_06855 0.55 +0.3
1,585,505 + CA264_06855 0.57 +0.4
1,585,596 + CA264_06855 0.61 -1.0
1,585,597 - CA264_06855 0.61 +0.0
1,585,597 - CA264_06855 0.61 +1.5
1,585,654 - CA264_06855 0.64 +0.9
1,585,752 + CA264_06855 0.69 +0.1
1,585,777 - CA264_06855 0.70 +1.1
1,585,833 + CA264_06855 0.73 -0.6
1,585,833 + CA264_06855 0.73 -0.0
1,585,833 + CA264_06855 0.73 +0.7
1,586,076 + CA264_06855 0.85 +1.1
1,586,148 + CA264_06855 0.89 +0.1
1,586,149 - CA264_06855 0.89 -0.9
1,586,182 + -0.8
1,586,182 + +0.9
1,586,183 - +0.1
1,586,183 - -0.0
1,586,183 - +0.6
1,586,188 + +0.7
1,586,188 + +0.2
1,586,188 + +0.3
1,586,189 - +0.2
1,586,189 - -0.9
1,586,189 - +1.4
1,586,190 + +0.9
1,586,191 - +0.3
1,586,220 + -1.5
1,586,290 + +0.4
1,586,369 + +0.5
1,586,621 + CA264_06860 0.42 +0.9
1,586,702 + CA264_06860 0.58 +0.6
1,586,702 + CA264_06860 0.58 +0.2
1,586,721 - CA264_06860 0.62 +0.8
1,586,812 - CA264_06860 0.80 -0.5
1,586,895 - -0.8
1,586,911 + +0.4
1,586,912 - -0.6
1,586,972 - -0.3
1,587,150 + +0.1
1,587,151 - -1.4
1,587,193 + -1.1
1,587,193 + -0.6
1,587,193 + -0.2
1,587,224 + CA264_06865 0.14 +0.1
1,587,226 + CA264_06865 0.15 +0.0
1,587,226 + CA264_06865 0.15 -0.2
1,587,227 - CA264_06865 0.15 -0.3
1,587,236 + CA264_06865 0.18 -0.5
1,587,236 + CA264_06865 0.18 -1.3
1,587,287 + CA264_06865 0.34 -0.4
1,587,291 + CA264_06865 0.35 -2.0

Or see this region's nucleotide sequence