Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03985

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03980 and CA264_03985 are separated by 156 nucleotidesCA264_03985 and CA264_03990 are separated by 219 nucleotides CA264_03980: CA264_03980 - hypothetical protein, at 921,791 to 924,523 _03980 CA264_03985: CA264_03985 - hypothetical protein, at 924,680 to 925,408 _03985 CA264_03990: CA264_03990 - alkyl hydroperoxide reductase, at 925,628 to 926,272 _03990 Position (kb) 924 925 926Strain fitness (log2 ratio) -2 -1 0 1 2at 923.687 kb on + strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.688 kb on - strand, within CA264_03980at 923.700 kb on - strand, within CA264_03980at 923.795 kb on + strand, within CA264_03980at 923.822 kb on + strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.823 kb on - strand, within CA264_03980at 923.834 kb on + strand, within CA264_03980at 923.874 kb on - strand, within CA264_03980at 923.925 kb on + strand, within CA264_03980at 923.932 kb on + strand, within CA264_03980at 923.996 kb on + strand, within CA264_03980at 923.997 kb on - strand, within CA264_03980at 924.063 kb on + strand, within CA264_03980at 924.261 kb on - strandat 924.365 kb on + strandat 924.369 kb on - strandat 924.369 kb on - strandat 924.371 kb on - strandat 924.526 kb on + strandat 924.546 kb on + strandat 924.547 kb on - strandat 924.547 kb on - strandat 924.550 kb on + strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.551 kb on - strandat 924.552 kb on + strandat 924.552 kb on + strandat 924.658 kb on + strandat 924.658 kb on + strandat 924.659 kb on - strandat 924.662 kb on + strandat 924.676 kb on - strandat 924.682 kb on - strandat 924.682 kb on - strandat 924.810 kb on - strand, within CA264_03985at 924.971 kb on - strand, within CA264_03985at 925.027 kb on + strand, within CA264_03985at 925.133 kb on + strand, within CA264_03985at 925.156 kb on + strand, within CA264_03985at 925.157 kb on - strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.267 kb on + strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.268 kb on - strand, within CA264_03985at 925.326 kb on - strand, within CA264_03985at 925.335 kb on + strand, within CA264_03985at 925.336 kb on - strandat 925.354 kb on - strandat 925.354 kb on - strandat 925.408 kb on + strandat 925.471 kb on - strandat 925.483 kb on - strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.512 kb on + strandat 925.513 kb on - strandat 925.513 kb on - strandat 925.520 kb on + strandat 925.520 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.534 kb on + strandat 925.535 kb on - strandat 925.535 kb on - strandat 925.545 kb on + strandat 925.620 kb on - strandat 925.678 kb on - strandat 925.726 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.735 kb on + strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.736 kb on - strand, within CA264_03990at 925.813 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.910 kb on + strand, within CA264_03990at 925.970 kb on + strand, within CA264_03990at 926.026 kb on + strand, within CA264_03990at 926.071 kb on + strand, within CA264_03990at 926.072 kb on - strand, within CA264_03990at 926.162 kb on + strand, within CA264_03990at 926.200 kb on - strand, within CA264_03990at 926.260 kb on + strandat 926.381 kb on + strandat 926.381 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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923,687 + CA264_03980 0.69 +0.1
923,688 - CA264_03980 0.69 +0.5
923,688 - CA264_03980 0.69 +0.3
923,700 - CA264_03980 0.70 -0.0
923,795 + CA264_03980 0.73 +0.6
923,822 + CA264_03980 0.74 -0.6
923,823 - CA264_03980 0.74 +0.2
923,823 - CA264_03980 0.74 +0.9
923,834 + CA264_03980 0.75 +0.2
923,874 - CA264_03980 0.76 -0.2
923,925 + CA264_03980 0.78 -1.3
923,932 + CA264_03980 0.78 -0.1
923,996 + CA264_03980 0.81 +0.3
923,997 - CA264_03980 0.81 -1.1
924,063 + CA264_03980 0.83 +0.7
924,261 - -1.5
924,365 + -0.4
924,369 - +0.7
924,369 - +0.0
924,371 - +0.7
924,526 + -1.6
924,546 + -0.6
924,547 - -1.1
924,547 - -0.5
924,550 + +0.6
924,551 - +0.2
924,551 - +1.0
924,551 - +0.4
924,551 - -1.0
924,551 - -0.2
924,551 - +0.0
924,551 - -1.1
924,552 + -0.0
924,552 + -0.3
924,658 + +0.4
924,658 + -0.0
924,659 - +0.3
924,662 + +0.3
924,676 - +0.6
924,682 - +0.4
924,682 - +0.4
924,810 - CA264_03985 0.18 +1.0
924,971 - CA264_03985 0.40 +1.4
925,027 + CA264_03985 0.48 -2.1
925,133 + CA264_03985 0.62 -1.1
925,156 + CA264_03985 0.65 +0.2
925,157 - CA264_03985 0.65 -0.8
925,267 + CA264_03985 0.81 -0.4
925,267 + CA264_03985 0.81 -0.2
925,267 + CA264_03985 0.81 -0.2
925,268 - CA264_03985 0.81 +0.5
925,268 - CA264_03985 0.81 +0.2
925,326 - CA264_03985 0.89 -0.1
925,335 + CA264_03985 0.90 +0.2
925,336 - -1.0
925,354 - +0.0
925,354 - -2.2
925,408 + -1.1
925,471 - -0.2
925,483 - -0.5
925,512 + -0.1
925,512 + -0.2
925,512 + +0.0
925,513 - -0.6
925,513 - -0.8
925,520 + -0.0
925,520 + +0.3
925,534 + +0.4
925,534 + -0.1
925,534 + -2.0
925,534 + -0.3
925,534 + -0.1
925,534 + -0.2
925,535 - +1.5
925,535 - +0.6
925,545 + -1.5
925,620 - +0.6
925,678 - -0.0
925,726 + CA264_03990 0.15 -0.1
925,735 + CA264_03990 0.17 -0.3
925,735 + CA264_03990 0.17 +0.5
925,736 - CA264_03990 0.17 -0.9
925,736 - CA264_03990 0.17 -0.8
925,813 + CA264_03990 0.29 +0.5
925,910 + CA264_03990 0.44 +0.3
925,910 + CA264_03990 0.44 -0.4
925,910 + CA264_03990 0.44 -0.3
925,910 + CA264_03990 0.44 -1.4
925,910 + CA264_03990 0.44 -0.9
925,970 + CA264_03990 0.53 -1.0
926,026 + CA264_03990 0.62 -0.3
926,071 + CA264_03990 0.69 +0.7
926,072 - CA264_03990 0.69 +0.2
926,162 + CA264_03990 0.83 -0.8
926,200 - CA264_03990 0.89 -0.4
926,260 + +2.2
926,381 + -0.1
926,381 + -0.5

Or see this region's nucleotide sequence