Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03455

Experiment: m.b. nitrite 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03450 and CA264_03455 are separated by 27 nucleotidesCA264_03455 and CA264_03460 are separated by 133 nucleotidesCA264_03460 and CA264_03465 are separated by 82 nucleotides CA264_03450: CA264_03450 - SusC/RagA family TonB-linked outer membrane protein, at 803,584 to 806,595 _03450 CA264_03455: CA264_03455 - hypothetical protein, at 806,623 to 807,945 _03455 CA264_03460: CA264_03460 - hypothetical protein, at 808,079 to 808,501 _03460 CA264_03465: CA264_03465 - hypothetical protein, at 808,584 to 809,066 _03465 Position (kb) 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2at 805.647 kb on - strand, within CA264_03450at 805.658 kb on + strand, within CA264_03450at 805.709 kb on - strand, within CA264_03450at 805.711 kb on + strand, within CA264_03450at 805.733 kb on + strand, within CA264_03450at 805.734 kb on - strand, within CA264_03450at 805.751 kb on + strand, within CA264_03450at 805.752 kb on - strand, within CA264_03450at 805.780 kb on + strand, within CA264_03450at 805.780 kb on + strand, within CA264_03450at 805.820 kb on + strand, within CA264_03450at 805.869 kb on + strand, within CA264_03450at 805.869 kb on + strand, within CA264_03450at 805.988 kb on - strand, within CA264_03450at 805.988 kb on - strand, within CA264_03450at 805.988 kb on - strand, within CA264_03450at 805.996 kb on + strand, within CA264_03450at 805.996 kb on + strand, within CA264_03450at 805.996 kb on + strand, within CA264_03450at 805.997 kb on - strand, within CA264_03450at 805.997 kb on - strand, within CA264_03450at 805.997 kb on - strand, within CA264_03450at 806.037 kb on + strand, within CA264_03450at 806.037 kb on + strand, within CA264_03450at 806.038 kb on - strand, within CA264_03450at 806.038 kb on - strand, within CA264_03450at 806.038 kb on - strand, within CA264_03450at 806.210 kb on - strand, within CA264_03450at 806.222 kb on + strand, within CA264_03450at 806.261 kb on - strand, within CA264_03450at 806.303 kb on + strandat 806.304 kb on - strandat 806.307 kb on + strandat 806.308 kb on - strandat 806.308 kb on - strandat 806.313 kb on + strandat 806.347 kb on + strandat 806.365 kb on + strandat 806.366 kb on - strandat 806.366 kb on - strandat 806.403 kb on + strandat 806.438 kb on + strandat 806.439 kb on - strandat 806.439 kb on - strandat 806.445 kb on - strandat 806.485 kb on + strandat 806.486 kb on - strandat 806.586 kb on - strandat 806.593 kb on + strandat 806.594 kb on - strandat 806.641 kb on + strandat 806.642 kb on - strandat 806.642 kb on - strandat 806.772 kb on - strand, within CA264_03455at 806.777 kb on + strand, within CA264_03455at 806.815 kb on + strand, within CA264_03455at 806.874 kb on - strand, within CA264_03455at 806.908 kb on - strand, within CA264_03455at 806.924 kb on + strand, within CA264_03455at 806.924 kb on + strand, within CA264_03455at 806.925 kb on - strand, within CA264_03455at 806.925 kb on - strand, within CA264_03455at 806.925 kb on - strand, within CA264_03455at 806.925 kb on - strand, within CA264_03455at 807.099 kb on + strand, within CA264_03455at 807.100 kb on - strand, within CA264_03455at 807.111 kb on + strand, within CA264_03455at 807.111 kb on + strand, within CA264_03455at 807.112 kb on - strand, within CA264_03455at 807.114 kb on - strand, within CA264_03455at 807.119 kb on + strand, within CA264_03455at 807.197 kb on + strand, within CA264_03455at 807.198 kb on - strand, within CA264_03455at 807.201 kb on + strand, within CA264_03455at 807.201 kb on + strand, within CA264_03455at 807.201 kb on + strand, within CA264_03455at 807.202 kb on - strand, within CA264_03455at 807.202 kb on - strand, within CA264_03455at 807.207 kb on + strand, within CA264_03455at 807.207 kb on + strand, within CA264_03455at 807.207 kb on + strand, within CA264_03455at 807.208 kb on - strand, within CA264_03455at 807.260 kb on + strand, within CA264_03455at 807.260 kb on + strand, within CA264_03455at 807.261 kb on - strand, within CA264_03455at 807.261 kb on - strand, within CA264_03455at 807.280 kb on + strand, within CA264_03455at 807.283 kb on - strand, within CA264_03455at 807.283 kb on - strand, within CA264_03455at 807.292 kb on + strand, within CA264_03455at 807.302 kb on - strand, within CA264_03455at 807.401 kb on - strand, within CA264_03455at 807.424 kb on + strand, within CA264_03455at 807.425 kb on - strand, within CA264_03455at 807.496 kb on + strand, within CA264_03455at 807.497 kb on - strand, within CA264_03455at 807.578 kb on + strandat 807.578 kb on + strand, within CA264_03455at 807.579 kb on - strand, within CA264_03455at 807.584 kb on + strand, within CA264_03455at 807.585 kb on - strand, within CA264_03455at 807.587 kb on - strand, within CA264_03455at 807.603 kb on - strand, within CA264_03455at 807.624 kb on + strand, within CA264_03455at 807.625 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.627 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.630 kb on - strand, within CA264_03455at 807.633 kb on + strand, within CA264_03455at 807.634 kb on - strand, within CA264_03455at 807.677 kb on + strand, within CA264_03455at 807.678 kb on - strand, within CA264_03455at 807.678 kb on - strand, within CA264_03455at 807.772 kb on + strand, within CA264_03455at 807.800 kb on + strand, within CA264_03455at 807.801 kb on - strand, within CA264_03455at 807.801 kb on - strand, within CA264_03455at 807.890 kb on - strandat 807.967 kb on - strandat 807.981 kb on - strandat 808.029 kb on + strandat 808.048 kb on + strandat 808.080 kb on + strandat 808.080 kb on + strandat 808.181 kb on + strand, within CA264_03460at 808.182 kb on - strand, within CA264_03460at 808.265 kb on - strand, within CA264_03460at 808.323 kb on + strand, within CA264_03460at 808.323 kb on + strand, within CA264_03460at 808.324 kb on - strand, within CA264_03460at 808.324 kb on - strand, within CA264_03460at 808.351 kb on + strand, within CA264_03460at 808.380 kb on + strand, within CA264_03460at 808.380 kb on + strand, within CA264_03460at 808.389 kb on - strand, within CA264_03460at 808.439 kb on + strand, within CA264_03460at 808.515 kb on - strandat 808.515 kb on - strandat 808.523 kb on + strandat 808.524 kb on - strandat 808.524 kb on - strandat 808.551 kb on + strandat 808.551 kb on + strandat 808.644 kb on + strand, within CA264_03465at 808.645 kb on - strand, within CA264_03465at 808.659 kb on - strand, within CA264_03465at 808.706 kb on - strand, within CA264_03465at 808.762 kb on - strand, within CA264_03465at 808.817 kb on + strand, within CA264_03465at 808.818 kb on - strand, within CA264_03465at 808.821 kb on + strand, within CA264_03465at 808.855 kb on + strand, within CA264_03465

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrite 30 mM
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805,647 - CA264_03450 0.68 -0.8
805,658 + CA264_03450 0.69 -0.3
805,709 - CA264_03450 0.71 -0.4
805,711 + CA264_03450 0.71 +0.1
805,733 + CA264_03450 0.71 +1.0
805,734 - CA264_03450 0.71 -1.1
805,751 + CA264_03450 0.72 +0.2
805,752 - CA264_03450 0.72 -0.5
805,780 + CA264_03450 0.73 -0.9
805,780 + CA264_03450 0.73 -0.6
805,820 + CA264_03450 0.74 +0.6
805,869 + CA264_03450 0.76 -0.3
805,869 + CA264_03450 0.76 +0.0
805,988 - CA264_03450 0.80 +0.4
805,988 - CA264_03450 0.80 -0.0
805,988 - CA264_03450 0.80 -0.2
805,996 + CA264_03450 0.80 -0.0
805,996 + CA264_03450 0.80 -2.3
805,996 + CA264_03450 0.80 +1.2
805,997 - CA264_03450 0.80 -0.3
805,997 - CA264_03450 0.80 +2.2
805,997 - CA264_03450 0.80 +0.5
806,037 + CA264_03450 0.81 +0.0
806,037 + CA264_03450 0.81 -0.7
806,038 - CA264_03450 0.81 -1.1
806,038 - CA264_03450 0.81 +0.8
806,038 - CA264_03450 0.81 -0.1
806,210 - CA264_03450 0.87 -1.1
806,222 + CA264_03450 0.88 +0.1
806,261 - CA264_03450 0.89 -0.0
806,303 + +0.2
806,304 - +0.6
806,307 + +0.4
806,308 - +0.4
806,308 - -0.4
806,313 + +0.1
806,347 + -0.1
806,365 + -0.2
806,366 - -0.5
806,366 - +0.5
806,403 + +0.5
806,438 + +0.1
806,439 - +0.1
806,439 - -0.7
806,445 - +1.4
806,485 + -0.8
806,486 - -0.1
806,586 - +0.0
806,593 + +0.8
806,594 - +0.7
806,641 + -1.0
806,642 - -0.0
806,642 - +0.5
806,772 - CA264_03455 0.11 -0.2
806,777 + CA264_03455 0.12 -0.0
806,815 + CA264_03455 0.15 -0.7
806,874 - CA264_03455 0.19 -0.1
806,908 - CA264_03455 0.22 -0.4
806,924 + CA264_03455 0.23 -1.2
806,924 + CA264_03455 0.23 -0.3
806,925 - CA264_03455 0.23 +0.9
806,925 - CA264_03455 0.23 +0.6
806,925 - CA264_03455 0.23 -0.2
806,925 - CA264_03455 0.23 +1.5
807,099 + CA264_03455 0.36 +0.0
807,100 - CA264_03455 0.36 +1.0
807,111 + CA264_03455 0.37 -1.4
807,111 + CA264_03455 0.37 -0.2
807,112 - CA264_03455 0.37 +0.6
807,114 - CA264_03455 0.37 +0.0
807,119 + CA264_03455 0.37 +0.1
807,197 + CA264_03455 0.43 -1.0
807,198 - CA264_03455 0.43 -0.6
807,201 + CA264_03455 0.44 -0.8
807,201 + CA264_03455 0.44 -0.7
807,201 + CA264_03455 0.44 +0.1
807,202 - CA264_03455 0.44 +0.5
807,202 - CA264_03455 0.44 -0.1
807,207 + CA264_03455 0.44 -0.8
807,207 + CA264_03455 0.44 -0.5
807,207 + CA264_03455 0.44 +0.0
807,208 - CA264_03455 0.44 +0.1
807,260 + CA264_03455 0.48 +1.2
807,260 + CA264_03455 0.48 +0.1
807,261 - CA264_03455 0.48 +1.0
807,261 - CA264_03455 0.48 -0.7
807,280 + CA264_03455 0.50 +0.8
807,283 - CA264_03455 0.50 +0.1
807,283 - CA264_03455 0.50 +0.1
807,292 + CA264_03455 0.51 -1.6
807,302 - CA264_03455 0.51 +1.1
807,401 - CA264_03455 0.59 +0.3
807,424 + CA264_03455 0.61 -0.2
807,425 - CA264_03455 0.61 +0.3
807,496 + CA264_03455 0.66 +0.9
807,497 - CA264_03455 0.66 +0.2
807,578 + -0.4
807,578 + CA264_03455 0.72 -1.0
807,579 - CA264_03455 0.72 +0.5
807,584 + CA264_03455 0.73 -0.7
807,585 - CA264_03455 0.73 +0.6
807,587 - CA264_03455 0.73 +0.0
807,603 - CA264_03455 0.74 -0.2
807,624 + CA264_03455 0.76 +0.2
807,625 - CA264_03455 0.76 +0.8
807,627 - CA264_03455 0.76 -0.2
807,627 - CA264_03455 0.76 +0.0
807,627 - CA264_03455 0.76 +0.6
807,630 - CA264_03455 0.76 -1.0
807,630 - CA264_03455 0.76 -0.0
807,630 - CA264_03455 0.76 +0.1
807,630 - CA264_03455 0.76 -0.4
807,633 + CA264_03455 0.76 +0.1
807,634 - CA264_03455 0.76 -0.5
807,677 + CA264_03455 0.80 +0.5
807,678 - CA264_03455 0.80 +0.2
807,678 - CA264_03455 0.80 +0.0
807,772 + CA264_03455 0.87 -0.1
807,800 + CA264_03455 0.89 +1.2
807,801 - CA264_03455 0.89 +0.3
807,801 - CA264_03455 0.89 -0.7
807,890 - -0.2
807,967 - -0.8
807,981 - -0.2
808,029 + -0.2
808,048 + +0.2
808,080 + -0.0
808,080 + +0.8
808,181 + CA264_03460 0.24 -0.2
808,182 - CA264_03460 0.24 -0.1
808,265 - CA264_03460 0.44 -0.3
808,323 + CA264_03460 0.58 -0.5
808,323 + CA264_03460 0.58 -0.9
808,324 - CA264_03460 0.58 -0.2
808,324 - CA264_03460 0.58 -1.1
808,351 + CA264_03460 0.64 +0.5
808,380 + CA264_03460 0.71 -0.6
808,380 + CA264_03460 0.71 -1.5
808,389 - CA264_03460 0.73 -0.5
808,439 + CA264_03460 0.85 -0.4
808,515 - -0.2
808,515 - +0.7
808,523 + -0.6
808,524 - +0.1
808,524 - -0.5
808,551 + +0.2
808,551 + -0.8
808,644 + CA264_03465 0.12 +0.0
808,645 - CA264_03465 0.13 -1.2
808,659 - CA264_03465 0.16 +0.4
808,706 - CA264_03465 0.25 -0.1
808,762 - CA264_03465 0.37 +1.2
808,817 + CA264_03465 0.48 -0.9
808,818 - CA264_03465 0.48 -1.1
808,821 + CA264_03465 0.49 -2.2
808,855 + CA264_03465 0.56 +1.6

Or see this region's nucleotide sequence