Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24150 and ABIE41_RS24155 overlap by 4 nucleotides ABIE41_RS24155 and ABIE41_RS24160 are separated by 349 nucleotides ABIE41_RS24160 and ABIE41_RS24165 are separated by 358 nucleotides
ABIE41_RS24150: ABIE41_RS24150 - TRAP transporter large permease subunit, at 4,985,906 to 4,987,189
_RS24150
ABIE41_RS24155: ABIE41_RS24155 - TRAP transporter small permease, at 4,987,186 to 4,987,731
_RS24155
ABIE41_RS24160: ABIE41_RS24160 - methyl-accepting chemotaxis protein, at 4,988,081 to 4,990,174
_RS24160
ABIE41_RS24165: ABIE41_RS24165 - methyl-accepting chemotaxis protein, at 4,990,533 to 4,993,217
_RS24165
Position (kb)
4988
4989
4990
4991 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.349 kb on + strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.350 kb on - strand, within ABIE41_RS24155 at 4987.351 kb on + strand, within ABIE41_RS24155 at 4987.366 kb on + strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.367 kb on - strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.631 kb on + strand, within ABIE41_RS24155 at 4987.632 kb on - strand, within ABIE41_RS24155 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.612 kb on + strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.613 kb on - strand, within ABIE41_RS24160 at 4989.673 kb on + strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.805 kb on - strand, within ABIE41_RS24160 at 4989.825 kb on + strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.826 kb on - strand, within ABIE41_RS24160 at 4989.928 kb on - strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.955 kb on + strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4989.956 kb on - strand, within ABIE41_RS24160 at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.069 kb on + strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.070 kb on - strand at 4990.084 kb on - strand at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.094 kb on + strand, within ABIE41_RS24165 at 4991.095 kb on - strand, within ABIE41_RS24165
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 4,987,349 + ABIE41_RS24155 0.30 -1.5 4,987,349 + ABIE41_RS24155 0.30 +2.4 4,987,349 + ABIE41_RS24155 0.30 +0.3 4,987,350 - ABIE41_RS24155 0.30 -3.5 4,987,350 - ABIE41_RS24155 0.30 +0.4 4,987,351 + ABIE41_RS24155 0.30 +0.4 4,987,366 + ABIE41_RS24155 0.33 +0.5 4,987,367 - ABIE41_RS24155 0.33 +0.8 4,987,367 - ABIE41_RS24155 0.33 -0.6 4,987,631 + ABIE41_RS24155 0.82 -0.7 4,987,631 + ABIE41_RS24155 0.82 +1.7 4,987,631 + ABIE41_RS24155 0.82 +0.9 4,987,632 - ABIE41_RS24155 0.82 +0.4 4,989,612 + ABIE41_RS24160 0.73 +1.0 4,989,612 + ABIE41_RS24160 0.73 -0.9 4,989,612 + ABIE41_RS24160 0.73 +0.8 4,989,612 + ABIE41_RS24160 0.73 -0.2 4,989,612 + ABIE41_RS24160 0.73 -0.2 4,989,612 + ABIE41_RS24160 0.73 +0.2 4,989,612 + ABIE41_RS24160 0.73 +0.2 4,989,613 - ABIE41_RS24160 0.73 -0.0 4,989,613 - ABIE41_RS24160 0.73 -0.0 4,989,613 - ABIE41_RS24160 0.73 +0.9 4,989,613 - ABIE41_RS24160 0.73 +2.3 4,989,613 - ABIE41_RS24160 0.73 +0.8 4,989,613 - ABIE41_RS24160 0.73 +0.2 4,989,613 - ABIE41_RS24160 0.73 +0.2 4,989,613 - ABIE41_RS24160 0.73 -0.4 4,989,613 - ABIE41_RS24160 0.73 -0.6 4,989,673 + ABIE41_RS24160 0.76 +0.1 4,989,805 - ABIE41_RS24160 0.82 -0.4 4,989,805 - ABIE41_RS24160 0.82 -0.3 4,989,825 + ABIE41_RS24160 0.83 -0.1 4,989,826 - ABIE41_RS24160 0.83 -0.3 4,989,826 - ABIE41_RS24160 0.83 -0.0 4,989,928 - ABIE41_RS24160 0.88 -0.4 4,989,955 + ABIE41_RS24160 0.89 -0.4 4,989,955 + ABIE41_RS24160 0.89 +2.3 4,989,956 - ABIE41_RS24160 0.90 -0.4 4,989,956 - ABIE41_RS24160 0.90 +0.3 4,990,069 + +0.9 4,990,069 + +0.3 4,990,069 + +0.2 4,990,070 - -0.3 4,990,070 - -2.7 4,990,070 - +2.1 4,990,070 - +0.9 4,990,070 - -0.7 4,990,084 - +0.0 4,991,094 + ABIE41_RS24165 0.21 -0.1 4,991,094 + ABIE41_RS24165 0.21 -0.6 4,991,095 - ABIE41_RS24165 0.21 +0.2
Or see this region's nucleotide sequence