Strain Fitness in Bosea sp. OAE506 around ABIE41_RS13660

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS13655 and ABIE41_RS13660 are separated by 149 nucleotidesABIE41_RS13660 and ABIE41_RS13665 are separated by 23 nucleotidesABIE41_RS13665 and ABIE41_RS13670 are separated by 153 nucleotides ABIE41_RS13655: ABIE41_RS13655 - GntR family transcriptional regulator, at 2,804,048 to 2,804,749 _RS13655 ABIE41_RS13660: ABIE41_RS13660 - flavin reductase family protein, at 2,804,899 to 2,805,417 _RS13660 ABIE41_RS13665: ABIE41_RS13665 - 4-carboxymuconolactone decarboxylase, at 2,805,441 to 2,805,842 _RS13665 ABIE41_RS13670: ABIE41_RS13670 - 3-oxoadipate enol-lactonase, at 2,805,996 to 2,806,775 _RS13670 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2803.994 kb on + strandat 2804.480 kb on + strand, within ABIE41_RS13655at 2804.480 kb on + strand, within ABIE41_RS13655at 2804.481 kb on - strand, within ABIE41_RS13655at 2804.482 kb on + strand, within ABIE41_RS13655at 2804.482 kb on + strand, within ABIE41_RS13655at 2804.483 kb on - strand, within ABIE41_RS13655at 2804.483 kb on - strand, within ABIE41_RS13655at 2804.531 kb on - strand, within ABIE41_RS13655at 2804.538 kb on - strand, within ABIE41_RS13655at 2804.538 kb on - strand, within ABIE41_RS13655at 2804.538 kb on - strand, within ABIE41_RS13655at 2804.776 kb on - strandat 2804.776 kb on - strandat 2804.776 kb on - strandat 2804.777 kb on + strandat 2804.778 kb on - strandat 2804.778 kb on - strandat 2805.225 kb on + strand, within ABIE41_RS13660at 2805.226 kb on - strand, within ABIE41_RS13660at 2805.226 kb on - strand, within ABIE41_RS13660at 2805.389 kb on - strandat 2805.526 kb on + strand, within ABIE41_RS13665at 2805.526 kb on + strand, within ABIE41_RS13665at 2805.527 kb on - strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.772 kb on + strand, within ABIE41_RS13665at 2805.773 kb on - strand, within ABIE41_RS13665at 2805.773 kb on - strand, within ABIE41_RS13665at 2805.773 kb on - strand, within ABIE41_RS13665at 2805.773 kb on - strand, within ABIE41_RS13665at 2806.234 kb on + strand, within ABIE41_RS13670at 2806.407 kb on - strand, within ABIE41_RS13670at 2806.407 kb on - strand, within ABIE41_RS13670

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,803,994 + +0.3
2,804,480 + ABIE41_RS13655 0.62 +1.3
2,804,480 + ABIE41_RS13655 0.62 -0.3
2,804,481 - ABIE41_RS13655 0.62 +0.6
2,804,482 + ABIE41_RS13655 0.62 -0.6
2,804,482 + ABIE41_RS13655 0.62 -1.0
2,804,483 - ABIE41_RS13655 0.62 -0.1
2,804,483 - ABIE41_RS13655 0.62 -0.6
2,804,531 - ABIE41_RS13655 0.69 -0.1
2,804,538 - ABIE41_RS13655 0.70 -0.6
2,804,538 - ABIE41_RS13655 0.70 -2.9
2,804,538 - ABIE41_RS13655 0.70 +1.0
2,804,776 - +1.2
2,804,776 - +0.7
2,804,776 - +0.3
2,804,777 + +0.1
2,804,778 - -2.9
2,804,778 - +0.0
2,805,225 + ABIE41_RS13660 0.63 -1.2
2,805,226 - ABIE41_RS13660 0.63 -0.9
2,805,226 - ABIE41_RS13660 0.63 -2.5
2,805,389 - +0.9
2,805,526 + ABIE41_RS13665 0.21 -0.4
2,805,526 + ABIE41_RS13665 0.21 -1.5
2,805,527 - ABIE41_RS13665 0.21 -0.5
2,805,772 + ABIE41_RS13665 0.82 -1.1
2,805,772 + ABIE41_RS13665 0.82 +1.4
2,805,772 + ABIE41_RS13665 0.82 +1.8
2,805,772 + ABIE41_RS13665 0.82 -0.2
2,805,772 + ABIE41_RS13665 0.82 +0.7
2,805,772 + ABIE41_RS13665 0.82 -0.1
2,805,772 + ABIE41_RS13665 0.82 +1.5
2,805,772 + ABIE41_RS13665 0.82 -2.1
2,805,773 - ABIE41_RS13665 0.83 +0.2
2,805,773 - ABIE41_RS13665 0.83 +0.0
2,805,773 - ABIE41_RS13665 0.83 +1.5
2,805,773 - ABIE41_RS13665 0.83 +0.3
2,806,234 + ABIE41_RS13670 0.31 +0.3
2,806,407 - ABIE41_RS13670 0.53 +0.9
2,806,407 - ABIE41_RS13670 0.53 -0.8

Or see this region's nucleotide sequence