Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30540 and ABIE40_RS30545 are separated by 191 nucleotides ABIE40_RS30545 and ABIE40_RS30550 overlap by 4 nucleotides ABIE40_RS30550 and ABIE40_RS30555 are separated by 284 nucleotides
ABIE40_RS30540: ABIE40_RS30540 - DUF4142 domain-containing protein, at 792,770 to 793,261
_RS30540
ABIE40_RS30545: ABIE40_RS30545 - DUF982 domain-containing protein, at 793,453 to 793,713
_RS30545
ABIE40_RS30550: ABIE40_RS30550 - DUF2243 domain-containing protein, at 793,710 to 794,192
_RS30550
ABIE40_RS30555: ABIE40_RS30555 - malto-oligosyltrehalose synthase, at 794,477 to 796,978
_RS30555
Position (kb) 793
794
795 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 792.718 kb on - strand at 792.727 kb on - strand at 792.779 kb on - strand at 792.891 kb on + strand, within ABIE40_RS30540 at 792.891 kb on + strand, within ABIE40_RS30540 at 792.911 kb on + strand, within ABIE40_RS30540 at 792.912 kb on - strand, within ABIE40_RS30540 at 792.927 kb on + strand, within ABIE40_RS30540 at 792.928 kb on - strand, within ABIE40_RS30540 at 793.040 kb on + strand, within ABIE40_RS30540 at 793.041 kb on - strand, within ABIE40_RS30540 at 793.075 kb on + strand, within ABIE40_RS30540 at 793.076 kb on - strand, within ABIE40_RS30540 at 793.239 kb on - strand at 793.420 kb on - strand at 793.426 kb on - strand at 793.426 kb on - strand at 793.432 kb on - strand at 793.432 kb on - strand at 793.508 kb on + strand, within ABIE40_RS30545 at 793.508 kb on + strand, within ABIE40_RS30545 at 793.514 kb on + strand, within ABIE40_RS30545 at 793.515 kb on - strand, within ABIE40_RS30545 at 793.680 kb on - strand, within ABIE40_RS30545 at 793.680 kb on - strand, within ABIE40_RS30545 at 793.838 kb on - strand, within ABIE40_RS30550 at 793.838 kb on - strand, within ABIE40_RS30550 at 793.838 kb on - strand, within ABIE40_RS30550 at 793.917 kb on + strand, within ABIE40_RS30550 at 793.917 kb on + strand, within ABIE40_RS30550 at 793.917 kb on + strand, within ABIE40_RS30550 at 793.918 kb on - strand, within ABIE40_RS30550 at 793.918 kb on - strand, within ABIE40_RS30550 at 793.940 kb on - strand, within ABIE40_RS30550 at 794.103 kb on + strand, within ABIE40_RS30550 at 794.275 kb on + strand at 794.276 kb on - strand at 794.424 kb on + strand at 794.425 kb on - strand at 794.428 kb on - strand at 794.669 kb on + strand at 794.669 kb on + strand at 794.669 kb on + strand at 794.670 kb on - strand at 794.700 kb on + strand at 794.701 kb on - strand at 794.701 kb on - strand at 794.701 kb on - strand at 794.735 kb on + strand, within ABIE40_RS30555 at 794.736 kb on - strand, within ABIE40_RS30555 at 794.749 kb on - strand, within ABIE40_RS30555 at 794.749 kb on - strand, within ABIE40_RS30555 at 794.864 kb on + strand, within ABIE40_RS30555 at 794.865 kb on - strand, within ABIE40_RS30555 at 794.865 kb on - strand, within ABIE40_RS30555 at 794.949 kb on + strand, within ABIE40_RS30555 at 794.950 kb on - strand, within ABIE40_RS30555 at 794.950 kb on - strand, within ABIE40_RS30555 at 794.950 kb on - strand, within ABIE40_RS30555 at 794.952 kb on - strand, within ABIE40_RS30555 at 794.953 kb on + strand, within ABIE40_RS30555 at 794.960 kb on + strand, within ABIE40_RS30555 at 794.998 kb on + strand, within ABIE40_RS30555 at 794.998 kb on + strand, within ABIE40_RS30555 at 794.999 kb on - strand, within ABIE40_RS30555 at 795.001 kb on + strand, within ABIE40_RS30555 at 795.001 kb on + strand, within ABIE40_RS30555 at 795.001 kb on + strand, within ABIE40_RS30555 at 795.002 kb on - strand, within ABIE40_RS30555 at 795.002 kb on - strand, within ABIE40_RS30555 at 795.002 kb on - strand, within ABIE40_RS30555 at 795.081 kb on - strand, within ABIE40_RS30555 at 795.093 kb on + strand, within ABIE40_RS30555 at 795.093 kb on + strand, within ABIE40_RS30555 at 795.114 kb on + strand, within ABIE40_RS30555 at 795.115 kb on - strand, within ABIE40_RS30555 at 795.115 kb on - strand, within ABIE40_RS30555 at 795.177 kb on + strand, within ABIE40_RS30555 at 795.177 kb on + strand, within ABIE40_RS30555
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 792,718 - +0.5 792,727 - -2.7 792,779 - +1.2 792,891 + ABIE40_RS30540 0.25 +0.2 792,891 + ABIE40_RS30540 0.25 +0.5 792,911 + ABIE40_RS30540 0.29 +0.5 792,912 - ABIE40_RS30540 0.29 -1.0 792,927 + ABIE40_RS30540 0.32 -1.3 792,928 - ABIE40_RS30540 0.32 -4.1 793,040 + ABIE40_RS30540 0.55 -1.1 793,041 - ABIE40_RS30540 0.55 -0.1 793,075 + ABIE40_RS30540 0.62 -0.3 793,076 - ABIE40_RS30540 0.62 +1.2 793,239 - +0.6 793,420 - -0.2 793,426 - -2.0 793,426 - -2.9 793,432 - +1.1 793,432 - +0.3 793,508 + ABIE40_RS30545 0.21 -1.7 793,508 + ABIE40_RS30545 0.21 -1.2 793,514 + ABIE40_RS30545 0.23 -2.7 793,515 - ABIE40_RS30545 0.24 -1.0 793,680 - ABIE40_RS30545 0.87 +1.2 793,680 - ABIE40_RS30545 0.87 +3.0 793,838 - ABIE40_RS30550 0.27 -1.6 793,838 - ABIE40_RS30550 0.27 -1.4 793,838 - ABIE40_RS30550 0.27 -1.1 793,917 + ABIE40_RS30550 0.43 -1.7 793,917 + ABIE40_RS30550 0.43 +0.7 793,917 + ABIE40_RS30550 0.43 -1.5 793,918 - ABIE40_RS30550 0.43 -2.2 793,918 - ABIE40_RS30550 0.43 -1.7 793,940 - ABIE40_RS30550 0.48 -0.1 794,103 + ABIE40_RS30550 0.81 -0.9 794,275 + -0.1 794,276 - +0.5 794,424 + -1.1 794,425 - +3.8 794,428 - +0.4 794,669 + -1.5 794,669 + -0.1 794,669 + -0.5 794,670 - +0.0 794,700 + +0.9 794,701 - -0.5 794,701 - +1.4 794,701 - +0.1 794,735 + ABIE40_RS30555 0.10 -0.6 794,736 - ABIE40_RS30555 0.10 -2.5 794,749 - ABIE40_RS30555 0.11 -0.2 794,749 - ABIE40_RS30555 0.11 +3.8 794,864 + ABIE40_RS30555 0.15 +0.8 794,865 - ABIE40_RS30555 0.16 -1.3 794,865 - ABIE40_RS30555 0.16 -0.6 794,949 + ABIE40_RS30555 0.19 -1.5 794,950 - ABIE40_RS30555 0.19 +0.7 794,950 - ABIE40_RS30555 0.19 +0.0 794,950 - ABIE40_RS30555 0.19 -3.0 794,952 - ABIE40_RS30555 0.19 +0.5 794,953 + ABIE40_RS30555 0.19 -0.3 794,960 + ABIE40_RS30555 0.19 +0.0 794,998 + ABIE40_RS30555 0.21 +0.3 794,998 + ABIE40_RS30555 0.21 +0.9 794,999 - ABIE40_RS30555 0.21 -3.9 795,001 + ABIE40_RS30555 0.21 -0.5 795,001 + ABIE40_RS30555 0.21 -0.7 795,001 + ABIE40_RS30555 0.21 -2.3 795,002 - ABIE40_RS30555 0.21 -2.6 795,002 - ABIE40_RS30555 0.21 +0.8 795,002 - ABIE40_RS30555 0.21 +0.9 795,081 - ABIE40_RS30555 0.24 -0.5 795,093 + ABIE40_RS30555 0.25 +1.3 795,093 + ABIE40_RS30555 0.25 -1.0 795,114 + ABIE40_RS30555 0.25 -3.0 795,115 - ABIE40_RS30555 0.25 +0.3 795,115 - ABIE40_RS30555 0.25 +0.7 795,177 + ABIE40_RS30555 0.28 +1.0 795,177 + ABIE40_RS30555 0.28 +0.6
Or see this region's nucleotide sequence