Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30310 and ABIE40_RS30315 are separated by 121 nucleotides ABIE40_RS30315 and ABIE40_RS30320 are separated by 27 nucleotides ABIE40_RS30320 and ABIE40_RS30325 are separated by 66 nucleotides ABIE40_RS30325 and ABIE40_RS30330 are separated by 136 nucleotides
ABIE40_RS30310: ABIE40_RS30310 - cold-shock protein, at 750,083 to 750,292
_RS30310
ABIE40_RS30315: ABIE40_RS30315 - hypothetical protein, at 750,414 to 750,641
_RS30315
ABIE40_RS30320: ABIE40_RS30320 - DUF6481 family protein, at 750,669 to 751,049
_RS30320
ABIE40_RS30325: ABIE40_RS30325 - hypothetical protein, at 751,116 to 751,391
_RS30325
ABIE40_RS30330: ABIE40_RS30330 - PAS domain S-box protein, at 751,528 to 752,520
_RS30330
Position (kb) 750
751 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 749.427 kb on - strand at 749.516 kb on + strand at 749.516 kb on + strand at 749.517 kb on - strand at 749.688 kb on + strand at 749.699 kb on + strand at 749.700 kb on - strand at 749.770 kb on + strand at 749.771 kb on - strand at 749.771 kb on - strand at 749.771 kb on - strand at 749.928 kb on + strand at 749.928 kb on + strand at 749.932 kb on + strand at 749.933 kb on - strand at 749.933 kb on - strand at 749.933 kb on - strand at 750.079 kb on + strand at 750.079 kb on + strand at 750.079 kb on + strand at 750.079 kb on + strand at 750.079 kb on + strand at 750.080 kb on - strand at 750.099 kb on + strand at 750.100 kb on - strand at 750.324 kb on + strand at 750.413 kb on - strand at 750.426 kb on + strand at 750.427 kb on - strand at 750.427 kb on - strand at 750.427 kb on - strand at 750.427 kb on - strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.431 kb on + strand at 750.432 kb on - strand at 750.432 kb on - strand at 750.614 kb on + strand, within ABIE40_RS30315 at 750.686 kb on + strand at 750.687 kb on - strand at 750.687 kb on - strand at 751.021 kb on - strand at 751.048 kb on - strand at 751.115 kb on + strand at 751.115 kb on + strand at 751.115 kb on + strand at 751.115 kb on + strand at 751.115 kb on + strand at 751.116 kb on - strand at 751.116 kb on - strand at 751.116 kb on - strand at 751.116 kb on - strand at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.165 kb on + strand, within ABIE40_RS30325 at 751.166 kb on - strand, within ABIE40_RS30325 at 751.166 kb on - strand, within ABIE40_RS30325 at 751.166 kb on - strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.169 kb on + strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.170 kb on - strand, within ABIE40_RS30325 at 751.202 kb on + strand, within ABIE40_RS30325 at 751.203 kb on - strand, within ABIE40_RS30325 at 751.203 kb on - strand, within ABIE40_RS30325 at 751.207 kb on - strand, within ABIE40_RS30325 at 751.207 kb on - strand, within ABIE40_RS30325 at 751.207 kb on - strand, within ABIE40_RS30325 at 751.377 kb on + strand at 751.377 kb on + strand at 751.377 kb on + strand at 751.509 kb on - strand at 751.565 kb on + strand at 751.566 kb on - strand at 751.604 kb on + strand at 751.611 kb on + strand at 751.611 kb on + strand at 751.611 kb on + strand at 751.611 kb on + strand at 751.616 kb on + strand at 751.616 kb on + strand at 751.616 kb on + strand at 751.617 kb on - strand at 751.617 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 749,427 - -0.7 749,516 + -0.8 749,516 + +0.4 749,517 - -1.2 749,688 + +0.0 749,699 + -1.8 749,700 - -1.5 749,770 + -0.5 749,771 - -1.7 749,771 - -2.2 749,771 - +0.9 749,928 + -0.4 749,928 + +0.5 749,932 + -0.5 749,933 - -1.2 749,933 - +0.6 749,933 - -1.0 750,079 + +1.8 750,079 + -3.4 750,079 + +0.5 750,079 + +0.8 750,079 + -0.5 750,080 - -1.3 750,099 + +1.5 750,100 - +0.0 750,324 + -1.6 750,413 - +0.5 750,426 + +0.1 750,427 - +0.2 750,427 - -3.0 750,427 - +0.2 750,427 - +0.7 750,431 + +1.8 750,431 + +0.1 750,431 + +1.6 750,431 + +0.2 750,431 + +0.2 750,431 + -0.6 750,431 + -0.5 750,432 - -0.4 750,432 - -0.9 750,614 + ABIE40_RS30315 0.88 -0.9 750,686 + -0.5 750,687 - +0.5 750,687 - +1.2 751,021 - -1.1 751,048 - +1.0 751,115 + -3.3 751,115 + -0.1 751,115 + +1.2 751,115 + +1.5 751,115 + -0.0 751,116 - +0.1 751,116 - -0.6 751,116 - -0.8 751,116 - -1.9 751,165 + ABIE40_RS30325 0.18 -1.2 751,165 + ABIE40_RS30325 0.18 -1.8 751,165 + ABIE40_RS30325 0.18 +3.1 751,165 + ABIE40_RS30325 0.18 +1.0 751,165 + ABIE40_RS30325 0.18 -1.0 751,165 + ABIE40_RS30325 0.18 -0.8 751,165 + ABIE40_RS30325 0.18 -1.1 751,166 - ABIE40_RS30325 0.18 -0.5 751,166 - ABIE40_RS30325 0.18 -0.0 751,166 - ABIE40_RS30325 0.18 -0.5 751,169 + ABIE40_RS30325 0.19 -0.4 751,169 + ABIE40_RS30325 0.19 +0.0 751,169 + ABIE40_RS30325 0.19 -0.5 751,169 + ABIE40_RS30325 0.19 -0.1 751,169 + ABIE40_RS30325 0.19 -2.7 751,169 + ABIE40_RS30325 0.19 +0.4 751,170 - ABIE40_RS30325 0.20 -0.7 751,170 - ABIE40_RS30325 0.20 -2.5 751,170 - ABIE40_RS30325 0.20 -1.5 751,170 - ABIE40_RS30325 0.20 -0.5 751,170 - ABIE40_RS30325 0.20 -0.7 751,170 - ABIE40_RS30325 0.20 +2.2 751,170 - ABIE40_RS30325 0.20 -1.2 751,202 + ABIE40_RS30325 0.31 -0.2 751,203 - ABIE40_RS30325 0.32 +0.6 751,203 - ABIE40_RS30325 0.32 -0.7 751,207 - ABIE40_RS30325 0.33 -1.0 751,207 - ABIE40_RS30325 0.33 -2.1 751,207 - ABIE40_RS30325 0.33 +0.3 751,377 + -1.7 751,377 + -1.2 751,377 + -1.9 751,509 - +1.1 751,565 + +0.2 751,566 - +2.8 751,604 + -0.4 751,611 + +1.3 751,611 + +0.0 751,611 + -0.1 751,611 + -1.0 751,616 + +0.8 751,616 + +0.2 751,616 + +1.0 751,617 - +0.7 751,617 - -0.5
Or see this region's nucleotide sequence