Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30280 and ABIE40_RS30285 are separated by 59 nucleotides ABIE40_RS30285 and ABIE40_RS30290 are separated by 273 nucleotides
ABIE40_RS30280: ABIE40_RS30280 - chaperonin GroEL, at 745,012 to 746,640
_RS30280
ABIE40_RS30285: ABIE40_RS30285 - co-chaperone GroES, at 746,700 to 747,014
_RS30285
ABIE40_RS30290: ABIE40_RS30290 - usg protein, at 747,288 to 747,560
_RS30290
Position (kb) 746
747
748 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 745.952 kb on - strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.985 kb on + strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 745.986 kb on - strand, within ABIE40_RS30280 at 746.116 kb on - strand, within ABIE40_RS30280 at 746.159 kb on + strand, within ABIE40_RS30280 at 746.160 kb on - strand, within ABIE40_RS30280 at 746.249 kb on - strand, within ABIE40_RS30280 at 746.622 kb on + strand at 746.657 kb on + strand at 746.677 kb on - strand at 746.677 kb on - strand at 746.736 kb on - strand, within ABIE40_RS30285 at 747.037 kb on + strand at 747.038 kb on - strand at 747.038 kb on - strand at 747.143 kb on + strand at 747.144 kb on - strand at 747.199 kb on + strand at 747.210 kb on + strand at 747.210 kb on + strand at 747.217 kb on + strand at 747.218 kb on - strand at 747.327 kb on + strand, within ABIE40_RS30290 at 747.354 kb on + strand, within ABIE40_RS30290 at 747.355 kb on - strand, within ABIE40_RS30290 at 747.360 kb on - strand, within ABIE40_RS30290 at 747.390 kb on + strand, within ABIE40_RS30290 at 747.390 kb on + strand, within ABIE40_RS30290 at 747.390 kb on + strand, within ABIE40_RS30290 at 747.390 kb on + strand, within ABIE40_RS30290 at 747.391 kb on - strand, within ABIE40_RS30290 at 747.391 kb on - strand, within ABIE40_RS30290 at 747.391 kb on - strand, within ABIE40_RS30290 at 747.405 kb on + strand, within ABIE40_RS30290 at 747.405 kb on + strand, within ABIE40_RS30290 at 747.405 kb on + strand, within ABIE40_RS30290 at 747.405 kb on + strand, within ABIE40_RS30290 at 747.406 kb on - strand, within ABIE40_RS30290 at 747.406 kb on - strand, within ABIE40_RS30290 at 747.406 kb on - strand, within ABIE40_RS30290 at 747.553 kb on + strand at 747.553 kb on + strand at 747.553 kb on + strand at 747.554 kb on - strand at 747.554 kb on - strand at 747.587 kb on + strand at 747.587 kb on + strand at 747.587 kb on + strand at 747.587 kb on + strand at 747.587 kb on + strand at 747.588 kb on - strand at 747.588 kb on - strand at 747.662 kb on + strand at 747.662 kb on + strand at 747.815 kb on + strand at 747.816 kb on - strand at 747.875 kb on + strand at 747.875 kb on + strand at 747.876 kb on - strand at 747.876 kb on - strand at 747.885 kb on + strand at 747.886 kb on - strand at 747.910 kb on + strand at 747.910 kb on + strand at 747.911 kb on - strand at 747.911 kb on - strand at 747.911 kb on - strand at 747.929 kb on + strand at 747.930 kb on - strand at 747.930 kb on - strand at 747.930 kb on - strand at 747.984 kb on + strand at 747.984 kb on + strand at 747.984 kb on + strand at 747.985 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 745,952 - ABIE40_RS30280 0.58 +0.5 745,985 + ABIE40_RS30280 0.60 -0.2 745,985 + ABIE40_RS30280 0.60 -1.1 745,985 + ABIE40_RS30280 0.60 -1.2 745,985 + ABIE40_RS30280 0.60 +1.9 745,985 + ABIE40_RS30280 0.60 +0.1 745,985 + ABIE40_RS30280 0.60 +0.8 745,986 - ABIE40_RS30280 0.60 -0.5 745,986 - ABIE40_RS30280 0.60 -0.7 745,986 - ABIE40_RS30280 0.60 +0.2 745,986 - ABIE40_RS30280 0.60 -0.7 745,986 - ABIE40_RS30280 0.60 -0.8 745,986 - ABIE40_RS30280 0.60 -1.4 745,986 - ABIE40_RS30280 0.60 +0.5 745,986 - ABIE40_RS30280 0.60 -0.4 746,116 - ABIE40_RS30280 0.68 -0.7 746,159 + ABIE40_RS30280 0.70 -1.8 746,160 - ABIE40_RS30280 0.70 +0.2 746,249 - ABIE40_RS30280 0.76 -0.1 746,622 + +0.0 746,657 + +0.2 746,677 - -0.4 746,677 - +0.3 746,736 - ABIE40_RS30285 0.11 -3.0 747,037 + -1.2 747,038 - +0.1 747,038 - -1.7 747,143 + +1.1 747,144 - -0.3 747,199 + +2.5 747,210 + -3.0 747,210 + -1.9 747,217 + -2.0 747,218 - -1.7 747,327 + ABIE40_RS30290 0.14 -0.9 747,354 + ABIE40_RS30290 0.24 -2.4 747,355 - ABIE40_RS30290 0.25 -1.2 747,360 - ABIE40_RS30290 0.26 -1.0 747,390 + ABIE40_RS30290 0.37 -1.4 747,390 + ABIE40_RS30290 0.37 -0.6 747,390 + ABIE40_RS30290 0.37 -2.3 747,390 + ABIE40_RS30290 0.37 +0.0 747,391 - ABIE40_RS30290 0.38 +0.8 747,391 - ABIE40_RS30290 0.38 -1.4 747,391 - ABIE40_RS30290 0.38 -0.3 747,405 + ABIE40_RS30290 0.43 +0.2 747,405 + ABIE40_RS30290 0.43 -1.1 747,405 + ABIE40_RS30290 0.43 -1.9 747,405 + ABIE40_RS30290 0.43 +1.6 747,406 - ABIE40_RS30290 0.43 -0.2 747,406 - ABIE40_RS30290 0.43 +0.3 747,406 - ABIE40_RS30290 0.43 -4.1 747,553 + +1.2 747,553 + +0.0 747,553 + +0.5 747,554 - +1.7 747,554 - -0.4 747,587 + -1.1 747,587 + +0.2 747,587 + +1.2 747,587 + +0.4 747,587 + -0.1 747,588 - -0.5 747,588 - +0.0 747,662 + +0.3 747,662 + +0.3 747,815 + -2.6 747,816 - +1.7 747,875 + +0.7 747,875 + -0.5 747,876 - -2.1 747,876 - +0.7 747,885 + -0.2 747,886 - +0.3 747,910 + +0.3 747,910 + -1.7 747,911 - -1.6 747,911 - -0.5 747,911 - -2.5 747,929 + +0.2 747,930 - +0.2 747,930 - -0.2 747,930 - -0.2 747,984 + -2.4 747,984 + +0.1 747,984 + -0.8 747,985 - -2.2
Or see this region's nucleotide sequence