Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS29330

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS29325 and ABIE40_RS29330 are separated by 95 nucleotidesABIE40_RS29330 and ABIE40_RS29335 are separated by 320 nucleotidesABIE40_RS29335 and ABIE40_RS29340 are separated by 28 nucleotides ABIE40_RS29325: ABIE40_RS29325 - SDR family oxidoreductase, at 562,501 to 563,229 _RS29325 ABIE40_RS29330: ABIE40_RS29330 - helix-turn-helix domain-containing protein, at 563,325 to 563,747 _RS29330 ABIE40_RS29335: ABIE40_RS29335 - hypothetical protein, at 564,068 to 564,238 _RS29335 ABIE40_RS29340: ABIE40_RS29340 - alpha/beta hydrolase, at 564,267 to 565,103 _RS29340 Position (kb) 563 564Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 562.429 kb on - strandat 562.525 kb on + strandat 562.624 kb on + strand, within ABIE40_RS29325at 562.699 kb on + strand, within ABIE40_RS29325at 562.699 kb on + strand, within ABIE40_RS29325at 562.785 kb on - strand, within ABIE40_RS29325at 562.785 kb on - strand, within ABIE40_RS29325at 562.785 kb on - strand, within ABIE40_RS29325at 562.785 kb on - strand, within ABIE40_RS29325at 562.793 kb on + strand, within ABIE40_RS29325at 563.061 kb on + strand, within ABIE40_RS29325at 563.062 kb on - strand, within ABIE40_RS29325at 563.198 kb on - strandat 563.244 kb on + strandat 563.245 kb on - strandat 563.261 kb on + strandat 563.263 kb on + strandat 563.277 kb on - strandat 563.300 kb on - strandat 563.318 kb on + strandat 563.321 kb on - strandat 563.355 kb on - strandat 563.401 kb on + strand, within ABIE40_RS29330at 563.411 kb on - strand, within ABIE40_RS29330at 563.626 kb on - strand, within ABIE40_RS29330at 563.627 kb on + strand, within ABIE40_RS29330at 563.627 kb on + strand, within ABIE40_RS29330at 563.627 kb on + strand, within ABIE40_RS29330at 563.627 kb on + strand, within ABIE40_RS29330at 563.627 kb on - strand, within ABIE40_RS29330at 563.628 kb on - strand, within ABIE40_RS29330at 563.628 kb on - strand, within ABIE40_RS29330at 563.676 kb on + strand, within ABIE40_RS29330at 563.677 kb on - strand, within ABIE40_RS29330at 563.677 kb on - strand, within ABIE40_RS29330at 563.694 kb on + strand, within ABIE40_RS29330at 563.694 kb on + strand, within ABIE40_RS29330at 563.695 kb on - strand, within ABIE40_RS29330at 563.695 kb on - strand, within ABIE40_RS29330at 563.763 kb on + strandat 563.763 kb on + strandat 563.763 kb on + strandat 563.781 kb on + strandat 563.781 kb on + strandat 563.799 kb on + strandat 563.799 kb on + strandat 563.800 kb on - strandat 563.800 kb on - strandat 564.137 kb on + strand, within ABIE40_RS29335at 564.137 kb on + strand, within ABIE40_RS29335at 564.138 kb on - strand, within ABIE40_RS29335at 564.138 kb on - strand, within ABIE40_RS29335at 564.142 kb on - strand, within ABIE40_RS29335at 564.275 kb on + strandat 564.275 kb on + strandat 564.275 kb on + strandat 564.276 kb on - strandat 564.276 kb on - strandat 564.276 kb on - strandat 564.276 kb on - strandat 564.276 kb on - strandat 564.277 kb on + strandat 564.277 kb on + strandat 564.278 kb on - strandat 564.278 kb on - strandat 564.278 kb on - strandat 564.278 kb on - strandat 564.278 kb on - strandat 564.278 kb on - strandat 564.306 kb on + strandat 564.307 kb on - strandat 564.489 kb on + strand, within ABIE40_RS29340at 564.489 kb on + strand, within ABIE40_RS29340at 564.489 kb on + strand, within ABIE40_RS29340at 564.489 kb on + strand, within ABIE40_RS29340at 564.489 kb on + strand, within ABIE40_RS29340at 564.490 kb on - strand, within ABIE40_RS29340at 564.490 kb on - strand, within ABIE40_RS29340at 564.490 kb on - strand, within ABIE40_RS29340at 564.490 kb on - strand, within ABIE40_RS29340

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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562,429 - +0.8
562,525 + -0.4
562,624 + ABIE40_RS29325 0.17 +0.5
562,699 + ABIE40_RS29325 0.27 -1.8
562,699 + ABIE40_RS29325 0.27 +0.6
562,785 - ABIE40_RS29325 0.39 +0.2
562,785 - ABIE40_RS29325 0.39 +0.0
562,785 - ABIE40_RS29325 0.39 +2.9
562,785 - ABIE40_RS29325 0.39 -1.1
562,793 + ABIE40_RS29325 0.40 -0.2
563,061 + ABIE40_RS29325 0.77 +0.7
563,062 - ABIE40_RS29325 0.77 -0.9
563,198 - +0.6
563,244 + -3.8
563,245 - +0.1
563,261 + -1.6
563,263 + -1.1
563,277 - -3.9
563,300 - +1.9
563,318 + -1.0
563,321 - -1.5
563,355 - +1.3
563,401 + ABIE40_RS29330 0.18 -0.9
563,411 - ABIE40_RS29330 0.20 -3.9
563,626 - ABIE40_RS29330 0.71 -2.2
563,627 + ABIE40_RS29330 0.71 -2.9
563,627 + ABIE40_RS29330 0.71 -2.6
563,627 + ABIE40_RS29330 0.71 -3.4
563,627 + ABIE40_RS29330 0.71 -1.5
563,627 - ABIE40_RS29330 0.71 -0.5
563,628 - ABIE40_RS29330 0.72 -1.8
563,628 - ABIE40_RS29330 0.72 +1.6
563,676 + ABIE40_RS29330 0.83 +0.4
563,677 - ABIE40_RS29330 0.83 -1.9
563,677 - ABIE40_RS29330 0.83 -1.1
563,694 + ABIE40_RS29330 0.87 -1.9
563,694 + ABIE40_RS29330 0.87 +0.0
563,695 - ABIE40_RS29330 0.87 -1.2
563,695 - ABIE40_RS29330 0.87 -0.9
563,763 + -0.5
563,763 + +0.5
563,763 + +0.1
563,781 + +1.6
563,781 + -0.0
563,799 + +2.9
563,799 + -0.5
563,800 - -0.9
563,800 - -2.4
564,137 + ABIE40_RS29335 0.40 +0.4
564,137 + ABIE40_RS29335 0.40 +0.8
564,138 - ABIE40_RS29335 0.41 -1.2
564,138 - ABIE40_RS29335 0.41 -2.0
564,142 - ABIE40_RS29335 0.43 -0.4
564,275 + +0.8
564,275 + -0.1
564,275 + -1.3
564,276 - -1.6
564,276 - -0.0
564,276 - +0.4
564,276 - -1.2
564,276 - -0.0
564,277 + -0.2
564,277 + -0.3
564,278 - +0.1
564,278 - +0.2
564,278 - +0.6
564,278 - +0.2
564,278 - -0.1
564,278 - -0.3
564,306 + +1.1
564,307 - -0.0
564,489 + ABIE40_RS29340 0.27 -0.8
564,489 + ABIE40_RS29340 0.27 -0.4
564,489 + ABIE40_RS29340 0.27 +2.3
564,489 + ABIE40_RS29340 0.27 -1.9
564,489 + ABIE40_RS29340 0.27 +1.9
564,490 - ABIE40_RS29340 0.27 -2.2
564,490 - ABIE40_RS29340 0.27 -1.3
564,490 - ABIE40_RS29340 0.27 -0.8
564,490 - ABIE40_RS29340 0.27 -3.4

Or see this region's nucleotide sequence