Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28780 and ABIE40_RS28785 overlap by 4 nucleotides ABIE40_RS28785 and ABIE40_RS28790 overlap by 4 nucleotides
ABIE40_RS28780: ABIE40_RS28780 - ABC-three component system protein, at 455,830 to 458,328
_RS28780
ABIE40_RS28785: ABIE40_RS28785 - ABC-three component system middle component 1, at 458,325 to 459,020
_RS28785
ABIE40_RS28790: ABIE40_RS28790 - AAA family ATPase, at 459,017 to 462,151
_RS28790
Position (kb) 458
459
460 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 457.368 kb on - strand, within ABIE40_RS28780 at 457.415 kb on + strand, within ABIE40_RS28780 at 457.500 kb on - strand, within ABIE40_RS28780 at 457.594 kb on - strand, within ABIE40_RS28780 at 457.599 kb on - strand, within ABIE40_RS28780 at 457.599 kb on - strand, within ABIE40_RS28780 at 457.626 kb on + strand, within ABIE40_RS28780 at 457.626 kb on + strand, within ABIE40_RS28780 at 457.627 kb on - strand, within ABIE40_RS28780 at 457.976 kb on + strand, within ABIE40_RS28780 at 457.989 kb on + strand, within ABIE40_RS28780 at 457.989 kb on + strand, within ABIE40_RS28780 at 457.990 kb on - strand, within ABIE40_RS28780 at 457.990 kb on - strand, within ABIE40_RS28780 at 457.990 kb on - strand, within ABIE40_RS28780 at 458.334 kb on - strand at 458.334 kb on - strand at 458.429 kb on - strand, within ABIE40_RS28785 at 458.475 kb on - strand, within ABIE40_RS28785 at 458.528 kb on + strand, within ABIE40_RS28785 at 459.178 kb on + strand at 459.200 kb on + strand at 459.200 kb on + strand at 459.201 kb on - strand at 459.201 kb on - strand at 459.201 kb on - strand at 459.202 kb on + strand at 459.202 kb on + strand at 459.202 kb on + strand at 459.202 kb on + strand at 459.202 kb on + strand at 459.202 kb on + strand at 459.203 kb on - strand at 459.203 kb on - strand at 459.274 kb on + strand at 459.274 kb on + strand at 459.274 kb on + strand at 459.274 kb on + strand at 459.274 kb on + strand at 459.275 kb on - strand at 459.386 kb on - strand, within ABIE40_RS28790 at 459.401 kb on + strand, within ABIE40_RS28790 at 459.401 kb on + strand, within ABIE40_RS28790 at 459.401 kb on + strand, within ABIE40_RS28790 at 459.401 kb on + strand, within ABIE40_RS28790 at 459.401 kb on + strand, within ABIE40_RS28790 at 459.402 kb on - strand, within ABIE40_RS28790 at 459.402 kb on - strand, within ABIE40_RS28790 at 459.847 kb on + strand, within ABIE40_RS28790 at 459.848 kb on - strand, within ABIE40_RS28790 at 459.881 kb on + strand, within ABIE40_RS28790 at 459.881 kb on + strand, within ABIE40_RS28790 at 459.882 kb on - strand, within ABIE40_RS28790 at 459.882 kb on - strand, within ABIE40_RS28790 at 459.882 kb on - strand, within ABIE40_RS28790 at 459.882 kb on - strand, within ABIE40_RS28790 at 459.885 kb on + strand, within ABIE40_RS28790 at 459.885 kb on + strand, within ABIE40_RS28790 at 459.885 kb on + strand, within ABIE40_RS28790 at 459.885 kb on + strand, within ABIE40_RS28790 at 459.885 kb on + strand, within ABIE40_RS28790 at 459.886 kb on - strand, within ABIE40_RS28790 at 459.886 kb on - strand, within ABIE40_RS28790 at 459.886 kb on - strand, within ABIE40_RS28790 at 459.886 kb on - strand, within ABIE40_RS28790 at 459.886 kb on - strand, within ABIE40_RS28790 at 459.889 kb on + strand, within ABIE40_RS28790 at 459.946 kb on + strand, within ABIE40_RS28790
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 457,368 - ABIE40_RS28780 0.62 +0.1 457,415 + ABIE40_RS28780 0.63 -1.4 457,500 - ABIE40_RS28780 0.67 +0.3 457,594 - ABIE40_RS28780 0.71 -0.8 457,599 - ABIE40_RS28780 0.71 -1.9 457,599 - ABIE40_RS28780 0.71 +0.6 457,626 + ABIE40_RS28780 0.72 -1.2 457,626 + ABIE40_RS28780 0.72 -4.0 457,627 - ABIE40_RS28780 0.72 +0.8 457,976 + ABIE40_RS28780 0.86 -1.0 457,989 + ABIE40_RS28780 0.86 -3.9 457,989 + ABIE40_RS28780 0.86 -1.0 457,990 - ABIE40_RS28780 0.86 +1.9 457,990 - ABIE40_RS28780 0.86 +0.3 457,990 - ABIE40_RS28780 0.86 +0.1 458,334 - +0.6 458,334 - +0.2 458,429 - ABIE40_RS28785 0.15 -3.3 458,475 - ABIE40_RS28785 0.22 -0.3 458,528 + ABIE40_RS28785 0.29 +0.3 459,178 + -0.8 459,200 + +0.9 459,200 + +0.0 459,201 - -2.7 459,201 - -1.3 459,201 - +0.3 459,202 + +0.6 459,202 + +0.8 459,202 + -0.4 459,202 + +2.2 459,202 + -1.6 459,202 + -0.7 459,203 - +2.7 459,203 - -0.3 459,274 + +0.1 459,274 + +0.7 459,274 + +0.3 459,274 + +0.5 459,274 + -2.0 459,275 - -0.0 459,386 - ABIE40_RS28790 0.12 -1.1 459,401 + ABIE40_RS28790 0.12 +0.0 459,401 + ABIE40_RS28790 0.12 -2.3 459,401 + ABIE40_RS28790 0.12 +0.6 459,401 + ABIE40_RS28790 0.12 +0.0 459,401 + ABIE40_RS28790 0.12 +0.9 459,402 - ABIE40_RS28790 0.12 -0.5 459,402 - ABIE40_RS28790 0.12 -0.5 459,847 + ABIE40_RS28790 0.26 -0.1 459,848 - ABIE40_RS28790 0.27 -2.2 459,881 + ABIE40_RS28790 0.28 +1.1 459,881 + ABIE40_RS28790 0.28 -2.0 459,882 - ABIE40_RS28790 0.28 -0.2 459,882 - ABIE40_RS28790 0.28 +0.1 459,882 - ABIE40_RS28790 0.28 +0.4 459,882 - ABIE40_RS28790 0.28 -2.0 459,885 + ABIE40_RS28790 0.28 -0.8 459,885 + ABIE40_RS28790 0.28 -1.9 459,885 + ABIE40_RS28790 0.28 -2.0 459,885 + ABIE40_RS28790 0.28 -1.0 459,885 + ABIE40_RS28790 0.28 -0.0 459,886 - ABIE40_RS28790 0.28 -1.2 459,886 - ABIE40_RS28790 0.28 +1.2 459,886 - ABIE40_RS28790 0.28 -0.8 459,886 - ABIE40_RS28790 0.28 +0.8 459,886 - ABIE40_RS28790 0.28 -1.0 459,889 + ABIE40_RS28790 0.28 -1.1 459,946 + ABIE40_RS28790 0.30 +2.1
Or see this region's nucleotide sequence