Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28605 and ABIE40_RS28610 are separated by 71 nucleotides ABIE40_RS28610 and ABIE40_RS28615 are separated by 10 nucleotides ABIE40_RS28615 and ABIE40_RS28620 are separated by 6 nucleotides ABIE40_RS28620 and ABIE40_RS28625 are separated by 222 nucleotides
ABIE40_RS28605: ABIE40_RS28605 - IS66 family transposase, at 421,688 to 423,220
_RS28605
ABIE40_RS28610: ABIE40_RS28610 - IS66 family insertion sequence element accessory protein TnpB, at 423,292 to 423,648
_RS28610
ABIE40_RS28615: ABIE40_RS28615 - transposase, at 423,659 to 424,120
_RS28615
ABIE40_RS28620: ABIE40_RS28620 - FAD-dependent oxidoreductase, at 424,127 to 424,381
_RS28620
ABIE40_RS28625: ABIE40_RS28625 - divalent metal cation transporter, at 424,604 to 425,812
_RS28625
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 422.673 kb on + strand, within ABIE40_RS28605 at 422.673 kb on + strand, within ABIE40_RS28605 at 422.677 kb on + strand, within ABIE40_RS28605 at 422.677 kb on + strand, within ABIE40_RS28605 at 422.677 kb on + strand, within ABIE40_RS28605 at 422.678 kb on - strand, within ABIE40_RS28605 at 422.678 kb on - strand, within ABIE40_RS28605 at 422.678 kb on - strand, within ABIE40_RS28605 at 422.678 kb on - strand, within ABIE40_RS28605 at 422.681 kb on + strand, within ABIE40_RS28605 at 422.682 kb on - strand, within ABIE40_RS28605 at 422.757 kb on - strand, within ABIE40_RS28605 at 422.757 kb on - strand, within ABIE40_RS28605 at 422.784 kb on + strand, within ABIE40_RS28605 at 422.784 kb on + strand, within ABIE40_RS28605 at 422.784 kb on + strand, within ABIE40_RS28605 at 422.785 kb on - strand, within ABIE40_RS28605 at 422.785 kb on - strand, within ABIE40_RS28605 at 422.785 kb on - strand, within ABIE40_RS28605 at 422.959 kb on + strand, within ABIE40_RS28605 at 422.960 kb on - strand, within ABIE40_RS28605 at 422.969 kb on - strand, within ABIE40_RS28605 at 423.114 kb on - strand at 423.236 kb on + strand at 423.237 kb on - strand at 423.304 kb on + strand at 423.518 kb on + strand, within ABIE40_RS28610 at 423.518 kb on + strand, within ABIE40_RS28610 at 423.519 kb on - strand, within ABIE40_RS28610 at 423.519 kb on - strand, within ABIE40_RS28610 at 423.559 kb on + strand, within ABIE40_RS28610 at 423.559 kb on + strand, within ABIE40_RS28610 at 423.560 kb on - strand, within ABIE40_RS28610 at 424.072 kb on + strand, within ABIE40_RS28615 at 424.073 kb on - strand, within ABIE40_RS28615 at 424.073 kb on - strand, within ABIE40_RS28615 at 424.073 kb on - strand, within ABIE40_RS28615 at 424.090 kb on + strand at 424.090 kb on + strand at 424.090 kb on + strand at 424.090 kb on + strand at 424.090 kb on + strand at 424.090 kb on + strand at 424.091 kb on - strand at 424.091 kb on - strand at 424.091 kb on - strand at 424.301 kb on + strand, within ABIE40_RS28620 at 424.301 kb on + strand, within ABIE40_RS28620 at 424.301 kb on + strand, within ABIE40_RS28620 at 424.302 kb on - strand, within ABIE40_RS28620 at 424.302 kb on - strand, within ABIE40_RS28620 at 424.302 kb on - strand, within ABIE40_RS28620 at 424.303 kb on + strand, within ABIE40_RS28620 at 424.303 kb on + strand, within ABIE40_RS28620 at 424.303 kb on + strand, within ABIE40_RS28620 at 424.304 kb on - strand, within ABIE40_RS28620 at 424.305 kb on + strand, within ABIE40_RS28620 at 424.305 kb on + strand, within ABIE40_RS28620 at 424.305 kb on + strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.306 kb on - strand, within ABIE40_RS28620 at 424.434 kb on + strand at 424.435 kb on - strand at 424.435 kb on - strand at 424.435 kb on - strand at 424.473 kb on + strand at 424.709 kb on - strand at 424.830 kb on - strand, within ABIE40_RS28625 at 424.830 kb on - strand, within ABIE40_RS28625 at 424.854 kb on + strand, within ABIE40_RS28625 at 424.854 kb on + strand, within ABIE40_RS28625 at 424.855 kb on - strand, within ABIE40_RS28625 at 425.033 kb on + strand, within ABIE40_RS28625 at 425.034 kb on - strand, within ABIE40_RS28625
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 422,673 + ABIE40_RS28605 0.64 -2.4 422,673 + ABIE40_RS28605 0.64 -0.4 422,677 + ABIE40_RS28605 0.65 -1.1 422,677 + ABIE40_RS28605 0.65 +0.5 422,677 + ABIE40_RS28605 0.65 -0.0 422,678 - ABIE40_RS28605 0.65 +1.6 422,678 - ABIE40_RS28605 0.65 +0.5 422,678 - ABIE40_RS28605 0.65 +0.4 422,678 - ABIE40_RS28605 0.65 -1.5 422,681 + ABIE40_RS28605 0.65 +0.4 422,682 - ABIE40_RS28605 0.65 +2.4 422,757 - ABIE40_RS28605 0.70 +0.5 422,757 - ABIE40_RS28605 0.70 -0.1 422,784 + ABIE40_RS28605 0.71 -1.6 422,784 + ABIE40_RS28605 0.71 -0.5 422,784 + ABIE40_RS28605 0.71 -0.2 422,785 - ABIE40_RS28605 0.72 +1.5 422,785 - ABIE40_RS28605 0.72 +0.9 422,785 - ABIE40_RS28605 0.72 +0.5 422,959 + ABIE40_RS28605 0.83 -1.8 422,960 - ABIE40_RS28605 0.83 +0.4 422,969 - ABIE40_RS28605 0.84 -2.8 423,114 - -0.5 423,236 + +1.8 423,237 - -2.0 423,304 + -0.1 423,518 + ABIE40_RS28610 0.63 -0.5 423,518 + ABIE40_RS28610 0.63 -2.2 423,519 - ABIE40_RS28610 0.64 -0.4 423,519 - ABIE40_RS28610 0.64 +1.8 423,559 + ABIE40_RS28610 0.75 -0.5 423,559 + ABIE40_RS28610 0.75 +0.2 423,560 - ABIE40_RS28610 0.75 -1.1 424,072 + ABIE40_RS28615 0.89 -0.4 424,073 - ABIE40_RS28615 0.90 +0.7 424,073 - ABIE40_RS28615 0.90 -0.6 424,073 - ABIE40_RS28615 0.90 -2.0 424,090 + -0.9 424,090 + -0.2 424,090 + +0.0 424,090 + -2.4 424,090 + -0.5 424,090 + -2.2 424,091 - +1.0 424,091 - -0.4 424,091 - +0.1 424,301 + ABIE40_RS28620 0.68 +0.4 424,301 + ABIE40_RS28620 0.68 -2.3 424,301 + ABIE40_RS28620 0.68 -2.3 424,302 - ABIE40_RS28620 0.69 -0.0 424,302 - ABIE40_RS28620 0.69 -1.7 424,302 - ABIE40_RS28620 0.69 +0.1 424,303 + ABIE40_RS28620 0.69 -0.8 424,303 + ABIE40_RS28620 0.69 +0.7 424,303 + ABIE40_RS28620 0.69 -0.6 424,304 - ABIE40_RS28620 0.69 +2.7 424,305 + ABIE40_RS28620 0.70 -2.0 424,305 + ABIE40_RS28620 0.70 -0.4 424,305 + ABIE40_RS28620 0.70 +0.5 424,306 - ABIE40_RS28620 0.70 -2.1 424,306 - ABIE40_RS28620 0.70 +0.9 424,306 - ABIE40_RS28620 0.70 -3.4 424,306 - ABIE40_RS28620 0.70 -0.4 424,306 - ABIE40_RS28620 0.70 -0.3 424,306 - ABIE40_RS28620 0.70 +0.6 424,434 + -3.1 424,435 - -0.3 424,435 - +0.7 424,435 - -0.7 424,473 + -0.4 424,709 - -1.1 424,830 - ABIE40_RS28625 0.19 -1.6 424,830 - ABIE40_RS28625 0.19 +0.9 424,854 + ABIE40_RS28625 0.21 +0.6 424,854 + ABIE40_RS28625 0.21 -1.5 424,855 - ABIE40_RS28625 0.21 -0.7 425,033 + ABIE40_RS28625 0.35 +0.5 425,034 - ABIE40_RS28625 0.36 +0.0
Or see this region's nucleotide sequence