Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28550 and ABIE40_RS28555 are separated by 20 nucleotides ABIE40_RS28555 and ABIE40_RS28560 overlap by 4 nucleotides ABIE40_RS28560 and ABIE40_RS28565 overlap by 4 nucleotides
ABIE40_RS28550: ABIE40_RS28550 - FdhF/YdeP family oxidoreductase, at 411,547 to 413,949
_RS28550
ABIE40_RS28555: ABIE40_RS28555 - cytochrome c, at 413,970 to 414,566
_RS28555
ABIE40_RS28560: ABIE40_RS28560 - cytochrome c oxidase subunit II, at 414,563 to 415,555
_RS28560
ABIE40_RS28565: ABIE40_RS28565 - cytochrome c oxidase subunit I, at 415,552 to 417,459
_RS28565
Position (kb) 414
415
416 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 413.632 kb on + strand, within ABIE40_RS28550 at 413.632 kb on + strand, within ABIE40_RS28550 at 413.633 kb on - strand, within ABIE40_RS28550 at 413.830 kb on + strand at 413.830 kb on + strand at 413.831 kb on - strand at 413.831 kb on - strand at 413.833 kb on + strand at 413.834 kb on - strand at 413.897 kb on - strand at 413.970 kb on - strand at 414.047 kb on - strand, within ABIE40_RS28555 at 414.072 kb on + strand, within ABIE40_RS28555 at 414.073 kb on - strand, within ABIE40_RS28555 at 414.073 kb on - strand, within ABIE40_RS28555 at 414.073 kb on - strand, within ABIE40_RS28555 at 414.157 kb on - strand, within ABIE40_RS28555 at 414.170 kb on + strand, within ABIE40_RS28555 at 414.192 kb on + strand, within ABIE40_RS28555 at 414.326 kb on - strand, within ABIE40_RS28555 at 414.326 kb on - strand, within ABIE40_RS28555 at 414.411 kb on + strand, within ABIE40_RS28555 at 414.412 kb on - strand, within ABIE40_RS28555 at 414.412 kb on - strand, within ABIE40_RS28555 at 414.412 kb on - strand, within ABIE40_RS28555 at 414.733 kb on - strand, within ABIE40_RS28560 at 414.733 kb on - strand, within ABIE40_RS28560 at 415.146 kb on - strand, within ABIE40_RS28560 at 415.166 kb on + strand, within ABIE40_RS28560 at 415.184 kb on - strand, within ABIE40_RS28560 at 415.184 kb on - strand, within ABIE40_RS28560 at 415.189 kb on + strand, within ABIE40_RS28560 at 415.190 kb on - strand, within ABIE40_RS28560 at 415.190 kb on - strand, within ABIE40_RS28560 at 415.207 kb on - strand, within ABIE40_RS28560 at 415.333 kb on + strand, within ABIE40_RS28560 at 415.483 kb on + strand at 415.483 kb on + strand at 415.535 kb on + strand at 415.539 kb on + strand at 415.539 kb on + strand at 415.613 kb on - strand at 415.623 kb on + strand at 415.693 kb on + strand at 415.693 kb on + strand at 415.694 kb on - strand at 415.780 kb on + strand, within ABIE40_RS28565 at 415.781 kb on - strand, within ABIE40_RS28565 at 415.781 kb on - strand, within ABIE40_RS28565 at 415.782 kb on + strand, within ABIE40_RS28565 at 415.783 kb on - strand, within ABIE40_RS28565 at 415.799 kb on - strand, within ABIE40_RS28565 at 415.827 kb on + strand, within ABIE40_RS28565 at 415.830 kb on + strand, within ABIE40_RS28565 at 415.830 kb on + strand, within ABIE40_RS28565 at 415.831 kb on - strand, within ABIE40_RS28565 at 415.831 kb on - strand, within ABIE40_RS28565 at 416.021 kb on - strand, within ABIE40_RS28565 at 416.021 kb on - strand, within ABIE40_RS28565 at 416.021 kb on - strand, within ABIE40_RS28565 at 416.021 kb on - strand, within ABIE40_RS28565 at 416.045 kb on - strand, within ABIE40_RS28565 at 416.086 kb on - strand, within ABIE40_RS28565 at 416.365 kb on + strand, within ABIE40_RS28565 at 416.365 kb on + strand, within ABIE40_RS28565 at 416.365 kb on + strand, within ABIE40_RS28565 at 416.366 kb on - strand, within ABIE40_RS28565 at 416.453 kb on + strand, within ABIE40_RS28565 at 416.523 kb on - strand, within ABIE40_RS28565
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 413,632 + ABIE40_RS28550 0.87 +0.8 413,632 + ABIE40_RS28550 0.87 +0.0 413,633 - ABIE40_RS28550 0.87 +0.2 413,830 + -0.4 413,830 + -3.1 413,831 - -1.0 413,831 - -1.8 413,833 + -0.5 413,834 - -0.4 413,897 - -0.5 413,970 - +1.3 414,047 - ABIE40_RS28555 0.13 -0.5 414,072 + ABIE40_RS28555 0.17 +0.5 414,073 - ABIE40_RS28555 0.17 +0.4 414,073 - ABIE40_RS28555 0.17 +0.9 414,073 - ABIE40_RS28555 0.17 +0.8 414,157 - ABIE40_RS28555 0.31 +0.6 414,170 + ABIE40_RS28555 0.34 -2.8 414,192 + ABIE40_RS28555 0.37 -0.4 414,326 - ABIE40_RS28555 0.60 +1.6 414,326 - ABIE40_RS28555 0.60 -1.4 414,411 + ABIE40_RS28555 0.74 +0.3 414,412 - ABIE40_RS28555 0.74 +0.6 414,412 - ABIE40_RS28555 0.74 +1.2 414,412 - ABIE40_RS28555 0.74 +0.5 414,733 - ABIE40_RS28560 0.17 -2.0 414,733 - ABIE40_RS28560 0.17 -1.9 415,146 - ABIE40_RS28560 0.59 -1.5 415,166 + ABIE40_RS28560 0.61 -0.3 415,184 - ABIE40_RS28560 0.63 -1.6 415,184 - ABIE40_RS28560 0.63 +0.1 415,189 + ABIE40_RS28560 0.63 -0.9 415,190 - ABIE40_RS28560 0.63 -1.0 415,190 - ABIE40_RS28560 0.63 -0.9 415,207 - ABIE40_RS28560 0.65 -0.0 415,333 + ABIE40_RS28560 0.78 -1.0 415,483 + -1.0 415,483 + +0.7 415,535 + +0.3 415,539 + +0.7 415,539 + -1.7 415,613 - -0.6 415,623 + +0.2 415,693 + +0.4 415,693 + +0.7 415,694 - -2.3 415,780 + ABIE40_RS28565 0.12 +0.3 415,781 - ABIE40_RS28565 0.12 +1.5 415,781 - ABIE40_RS28565 0.12 +0.8 415,782 + ABIE40_RS28565 0.12 +0.7 415,783 - ABIE40_RS28565 0.12 +2.1 415,799 - ABIE40_RS28565 0.13 +0.3 415,827 + ABIE40_RS28565 0.14 -0.7 415,830 + ABIE40_RS28565 0.15 -0.7 415,830 + ABIE40_RS28565 0.15 -0.9 415,831 - ABIE40_RS28565 0.15 -1.2 415,831 - ABIE40_RS28565 0.15 -0.9 416,021 - ABIE40_RS28565 0.25 -1.3 416,021 - ABIE40_RS28565 0.25 -0.5 416,021 - ABIE40_RS28565 0.25 +0.4 416,021 - ABIE40_RS28565 0.25 -0.7 416,045 - ABIE40_RS28565 0.26 +2.6 416,086 - ABIE40_RS28565 0.28 +0.6 416,365 + ABIE40_RS28565 0.43 +1.7 416,365 + ABIE40_RS28565 0.43 -2.2 416,365 + ABIE40_RS28565 0.43 +1.8 416,366 - ABIE40_RS28565 0.43 +1.6 416,453 + ABIE40_RS28565 0.47 -0.0 416,523 - ABIE40_RS28565 0.51 -2.3
Or see this region's nucleotide sequence