Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28480 and ABIE40_RS28485 overlap by 23 nucleotides ABIE40_RS28485 and ABIE40_RS28490 overlap by 32 nucleotides
ABIE40_RS28480: ABIE40_RS28480 - zinc-dependent alcohol dehydrogenase, at 399,254 to 400,429
_RS28480
ABIE40_RS28485: ABIE40_RS28485 - hypothetical protein, at 400,407 to 400,625
_RS28485
ABIE40_RS28490: ABIE40_RS28490 - SDR family oxidoreductase, at 400,594 to 401,580
_RS28490
Position (kb) 400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 399.589 kb on + strand, within ABIE40_RS28480 at 399.589 kb on + strand, within ABIE40_RS28480 at 399.589 kb on + strand, within ABIE40_RS28480 at 399.657 kb on - strand, within ABIE40_RS28480 at 399.677 kb on + strand, within ABIE40_RS28480 at 399.678 kb on - strand, within ABIE40_RS28480 at 399.979 kb on + strand, within ABIE40_RS28480 at 400.190 kb on + strand, within ABIE40_RS28480 at 400.191 kb on - strand, within ABIE40_RS28480 at 400.277 kb on + strand, within ABIE40_RS28480 at 400.336 kb on + strand at 400.337 kb on - strand at 400.337 kb on - strand at 400.337 kb on - strand at 400.337 kb on - strand at 400.373 kb on + strand at 400.373 kb on + strand at 400.373 kb on + strand at 400.427 kb on + strand at 400.488 kb on + strand, within ABIE40_RS28485 at 400.488 kb on + strand, within ABIE40_RS28485 at 400.489 kb on - strand, within ABIE40_RS28485 at 400.782 kb on + strand, within ABIE40_RS28490 at 400.782 kb on + strand, within ABIE40_RS28490 at 400.783 kb on - strand, within ABIE40_RS28490 at 400.783 kb on - strand, within ABIE40_RS28490 at 400.941 kb on + strand, within ABIE40_RS28490 at 400.942 kb on - strand, within ABIE40_RS28490 at 400.942 kb on - strand, within ABIE40_RS28490 at 400.942 kb on - strand, within ABIE40_RS28490 at 400.942 kb on - strand, within ABIE40_RS28490 at 400.995 kb on - strand, within ABIE40_RS28490 at 401.005 kb on - strand, within ABIE40_RS28490 at 401.005 kb on - strand, within ABIE40_RS28490 at 401.050 kb on + strand, within ABIE40_RS28490 at 401.128 kb on - strand, within ABIE40_RS28490 at 401.128 kb on - strand, within ABIE40_RS28490 at 401.136 kb on + strand, within ABIE40_RS28490 at 401.140 kb on + strand, within ABIE40_RS28490 at 401.140 kb on + strand, within ABIE40_RS28490 at 401.140 kb on + strand, within ABIE40_RS28490 at 401.185 kb on + strand, within ABIE40_RS28490 at 401.185 kb on + strand, within ABIE40_RS28490 at 401.186 kb on - strand, within ABIE40_RS28490 at 401.186 kb on - strand, within ABIE40_RS28490 at 401.186 kb on - strand, within ABIE40_RS28490 at 401.186 kb on - strand, within ABIE40_RS28490 at 401.250 kb on + strand, within ABIE40_RS28490 at 401.251 kb on - strand, within ABIE40_RS28490 at 401.374 kb on + strand, within ABIE40_RS28490 at 401.374 kb on + strand, within ABIE40_RS28490 at 401.375 kb on - strand, within ABIE40_RS28490 at 401.375 kb on - strand, within ABIE40_RS28490 at 401.419 kb on + strand, within ABIE40_RS28490 at 401.486 kb on + strand at 401.513 kb on + strand at 401.545 kb on + strand at 401.546 kb on - strand at 401.578 kb on + strand at 401.582 kb on + strand at 401.582 kb on + strand at 401.583 kb on - strand at 401.583 kb on - strand at 401.583 kb on - strand at 401.607 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 399,589 + ABIE40_RS28480 0.28 -1.6 399,589 + ABIE40_RS28480 0.28 +1.8 399,589 + ABIE40_RS28480 0.28 +1.8 399,657 - ABIE40_RS28480 0.34 -0.3 399,677 + ABIE40_RS28480 0.36 -0.9 399,678 - ABIE40_RS28480 0.36 -0.4 399,979 + ABIE40_RS28480 0.62 +0.6 400,190 + ABIE40_RS28480 0.80 +0.5 400,191 - ABIE40_RS28480 0.80 -0.5 400,277 + ABIE40_RS28480 0.87 +1.1 400,336 + -0.9 400,337 - -0.7 400,337 - -0.9 400,337 - -0.1 400,337 - -2.8 400,373 + -0.3 400,373 + +0.5 400,373 + +0.5 400,427 + -0.4 400,488 + ABIE40_RS28485 0.37 -0.9 400,488 + ABIE40_RS28485 0.37 -1.0 400,489 - ABIE40_RS28485 0.37 +0.4 400,782 + ABIE40_RS28490 0.19 -1.3 400,782 + ABIE40_RS28490 0.19 +1.1 400,783 - ABIE40_RS28490 0.19 -1.7 400,783 - ABIE40_RS28490 0.19 +2.3 400,941 + ABIE40_RS28490 0.35 +2.1 400,942 - ABIE40_RS28490 0.35 +0.2 400,942 - ABIE40_RS28490 0.35 -0.1 400,942 - ABIE40_RS28490 0.35 -0.9 400,942 - ABIE40_RS28490 0.35 +2.3 400,995 - ABIE40_RS28490 0.41 +0.8 401,005 - ABIE40_RS28490 0.42 +0.1 401,005 - ABIE40_RS28490 0.42 +3.1 401,050 + ABIE40_RS28490 0.46 -0.2 401,128 - ABIE40_RS28490 0.54 +0.7 401,128 - ABIE40_RS28490 0.54 +0.1 401,136 + ABIE40_RS28490 0.55 -0.8 401,140 + ABIE40_RS28490 0.55 +0.3 401,140 + ABIE40_RS28490 0.55 +0.2 401,140 + ABIE40_RS28490 0.55 -2.0 401,185 + ABIE40_RS28490 0.60 +1.0 401,185 + ABIE40_RS28490 0.60 +0.4 401,186 - ABIE40_RS28490 0.60 +0.7 401,186 - ABIE40_RS28490 0.60 -0.2 401,186 - ABIE40_RS28490 0.60 +0.0 401,186 - ABIE40_RS28490 0.60 +0.0 401,250 + ABIE40_RS28490 0.66 -0.9 401,251 - ABIE40_RS28490 0.67 -0.5 401,374 + ABIE40_RS28490 0.79 +0.0 401,374 + ABIE40_RS28490 0.79 -1.7 401,375 - ABIE40_RS28490 0.79 -0.3 401,375 - ABIE40_RS28490 0.79 -0.3 401,419 + ABIE40_RS28490 0.84 -2.3 401,486 + -1.9 401,513 + +0.6 401,545 + -0.2 401,546 - +1.0 401,578 + -2.6 401,582 + -2.0 401,582 + -2.6 401,583 - -1.7 401,583 - -0.2 401,583 - +1.0 401,607 + -1.3
Or see this region's nucleotide sequence