Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28285 and ABIE40_RS28290 are separated by 72 nucleotides ABIE40_RS28290 and ABIE40_RS28295 are separated by 176 nucleotides ABIE40_RS28295 and ABIE40_RS28300 overlap by 19 nucleotides ABIE40_RS28300 and ABIE40_RS28305 are separated by 279 nucleotides
ABIE40_RS28285: ABIE40_RS28285 - alpha/beta hydrolase, at 362,424 to 363,464
_RS28285
ABIE40_RS28290: ABIE40_RS28290 - 3-oxoacyl-ACP reductase family protein, at 363,537 to 364,277
_RS28290
ABIE40_RS28295: ABIE40_RS28295 - hypothetical protein, at 364,454 to 364,651
_RS28295
ABIE40_RS28300: ABIE40_RS28300 - ester cyclase, at 364,633 to 364,896
_RS28300
ABIE40_RS28305: ABIE40_RS28305 - TetR/AcrR family transcriptional regulator, at 365,176 to 365,754
_RS28305
Position (kb) 364
365 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 363.462 kb on + strand at 363.547 kb on + strand at 363.554 kb on + strand at 363.554 kb on + strand at 363.646 kb on - strand, within ABIE40_RS28290 at 363.657 kb on - strand, within ABIE40_RS28290 at 363.982 kb on - strand, within ABIE40_RS28290 at 364.000 kb on - strand, within ABIE40_RS28290 at 364.031 kb on + strand, within ABIE40_RS28290 at 364.032 kb on - strand, within ABIE40_RS28290 at 364.268 kb on - strand at 364.268 kb on - strand at 364.268 kb on - strand at 364.268 kb on - strand at 364.275 kb on + strand at 364.275 kb on + strand at 364.276 kb on - strand at 364.276 kb on - strand at 364.276 kb on - strand at 364.276 kb on - strand at 364.350 kb on + strand at 364.350 kb on + strand at 364.350 kb on + strand at 364.351 kb on - strand at 364.351 kb on - strand at 364.356 kb on - strand at 364.356 kb on - strand at 364.356 kb on - strand at 364.356 kb on - strand at 364.402 kb on - strand at 364.440 kb on + strand at 364.523 kb on + strand, within ABIE40_RS28295 at 364.532 kb on + strand, within ABIE40_RS28295 at 364.532 kb on + strand, within ABIE40_RS28295 at 364.810 kb on + strand, within ABIE40_RS28300 at 364.811 kb on - strand, within ABIE40_RS28300 at 364.894 kb on + strand at 364.895 kb on + strand at 364.895 kb on - strand at 364.905 kb on + strand at 364.926 kb on - strand at 364.926 kb on - strand at 364.926 kb on - strand at 364.936 kb on - strand at 364.936 kb on - strand at 364.986 kb on - strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.991 kb on + strand at 364.992 kb on - strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.026 kb on + strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.027 kb on - strand at 365.138 kb on + strand at 365.138 kb on + strand at 365.139 kb on - strand at 365.139 kb on - strand at 365.159 kb on + strand at 365.160 kb on - strand at 365.166 kb on + strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.167 kb on - strand at 365.281 kb on + strand, within ABIE40_RS28305 at 365.282 kb on - strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.371 kb on + strand, within ABIE40_RS28305 at 365.413 kb on + strand, within ABIE40_RS28305 at 365.432 kb on + strand, within ABIE40_RS28305 at 365.432 kb on + strand, within ABIE40_RS28305 at 365.433 kb on - strand, within ABIE40_RS28305 at 365.433 kb on - strand, within ABIE40_RS28305 at 365.487 kb on + strand, within ABIE40_RS28305 at 365.603 kb on + strand, within ABIE40_RS28305 at 365.604 kb on - strand, within ABIE40_RS28305 at 365.622 kb on - strand, within ABIE40_RS28305 at 365.622 kb on - strand, within ABIE40_RS28305
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 363,462 + +0.1 363,547 + -0.8 363,554 + -0.9 363,554 + +0.4 363,646 - ABIE40_RS28290 0.15 +0.0 363,657 - ABIE40_RS28290 0.16 +0.8 363,982 - ABIE40_RS28290 0.60 -0.6 364,000 - ABIE40_RS28290 0.62 +0.2 364,031 + ABIE40_RS28290 0.67 +0.2 364,032 - ABIE40_RS28290 0.67 +0.3 364,268 - -0.2 364,268 - -0.6 364,268 - -1.4 364,268 - -1.0 364,275 + -2.8 364,275 + -1.4 364,276 - -0.3 364,276 - -1.5 364,276 - -0.1 364,276 - -2.0 364,350 + -1.3 364,350 + -0.2 364,350 + +1.5 364,351 - -3.2 364,351 - -1.6 364,356 - +0.0 364,356 - +2.2 364,356 - +1.5 364,356 - -1.0 364,402 - -0.1 364,440 + -0.3 364,523 + ABIE40_RS28295 0.35 -1.8 364,532 + ABIE40_RS28295 0.39 -1.4 364,532 + ABIE40_RS28295 0.39 -0.7 364,810 + ABIE40_RS28300 0.67 +0.0 364,811 - ABIE40_RS28300 0.67 +0.5 364,894 + +0.1 364,895 + -1.2 364,895 - -0.3 364,905 + +0.2 364,926 - +0.6 364,926 - -0.2 364,926 - -2.2 364,936 - -1.1 364,936 - -1.2 364,986 - -0.6 364,991 + +2.3 364,991 + +1.4 364,991 + -1.7 364,991 + +0.6 364,992 - -1.6 365,026 + +0.4 365,026 + +0.3 365,026 + -1.2 365,026 + +0.1 365,026 + -0.2 365,026 + +0.6 365,027 - +0.6 365,027 - -0.7 365,027 - -3.2 365,027 - +0.6 365,027 - -1.9 365,138 + -2.2 365,138 + -0.1 365,139 - -0.5 365,139 - -1.8 365,159 + -0.5 365,160 - -1.7 365,166 + +0.2 365,167 - -2.3 365,167 - -0.6 365,167 - +0.5 365,281 + ABIE40_RS28305 0.18 -1.4 365,282 - ABIE40_RS28305 0.18 -0.4 365,371 + ABIE40_RS28305 0.34 +1.2 365,371 + ABIE40_RS28305 0.34 -1.9 365,371 + ABIE40_RS28305 0.34 +1.0 365,413 + ABIE40_RS28305 0.41 -0.6 365,432 + ABIE40_RS28305 0.44 -1.2 365,432 + ABIE40_RS28305 0.44 +0.2 365,433 - ABIE40_RS28305 0.44 -1.3 365,433 - ABIE40_RS28305 0.44 -3.3 365,487 + ABIE40_RS28305 0.54 -0.6 365,603 + ABIE40_RS28305 0.74 -1.4 365,604 - ABIE40_RS28305 0.74 +0.3 365,622 - ABIE40_RS28305 0.77 -0.6 365,622 - ABIE40_RS28305 0.77 -0.6
Or see this region's nucleotide sequence