Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27830 and ABIE40_RS27835 are separated by 39 nucleotides ABIE40_RS27835 and ABIE40_RS27840 are separated by 795 nucleotides
ABIE40_RS27830: ABIE40_RS27830 - DNA polymerase IV, at 279,750 to 280,835
_RS27830
ABIE40_RS27835: ABIE40_RS27835 - lipocalin family protein, at 280,875 to 281,408
_RS27835
ABIE40_RS27840: ABIE40_RS27840 - hypothetical protein, at 282,204 to 282,380
_RS27840
Position (kb) 280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 279.902 kb on + strand, within ABIE40_RS27830 at 279.902 kb on + strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 279.907 kb on - strand, within ABIE40_RS27830 at 280.005 kb on + strand, within ABIE40_RS27830 at 280.006 kb on - strand, within ABIE40_RS27830 at 280.047 kb on + strand, within ABIE40_RS27830 at 280.048 kb on - strand, within ABIE40_RS27830 at 280.086 kb on + strand, within ABIE40_RS27830 at 280.087 kb on - strand, within ABIE40_RS27830 at 280.113 kb on + strand, within ABIE40_RS27830 at 280.115 kb on + strand, within ABIE40_RS27830 at 280.116 kb on - strand, within ABIE40_RS27830 at 280.200 kb on + strand, within ABIE40_RS27830 at 280.200 kb on + strand, within ABIE40_RS27830 at 280.200 kb on + strand, within ABIE40_RS27830 at 280.201 kb on - strand, within ABIE40_RS27830 at 280.438 kb on - strand, within ABIE40_RS27830 at 280.536 kb on + strand, within ABIE40_RS27830 at 280.536 kb on + strand, within ABIE40_RS27830 at 280.536 kb on + strand, within ABIE40_RS27830 at 280.537 kb on - strand, within ABIE40_RS27830 at 280.537 kb on - strand, within ABIE40_RS27830 at 280.537 kb on - strand, within ABIE40_RS27830 at 280.537 kb on - strand, within ABIE40_RS27830 at 280.537 kb on - strand, within ABIE40_RS27830 at 280.638 kb on + strand, within ABIE40_RS27830 at 280.760 kb on - strand at 280.780 kb on + strand at 280.828 kb on + strand at 280.828 kb on + strand at 280.828 kb on + strand at 280.829 kb on - strand at 280.876 kb on + strand at 280.876 kb on + strand at 280.876 kb on + strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.877 kb on - strand at 280.944 kb on - strand, within ABIE40_RS27835 at 280.990 kb on + strand, within ABIE40_RS27835 at 281.083 kb on - strand, within ABIE40_RS27835 at 281.192 kb on + strand, within ABIE40_RS27835 at 281.192 kb on + strand, within ABIE40_RS27835 at 281.192 kb on + strand, within ABIE40_RS27835 at 281.212 kb on + strand, within ABIE40_RS27835 at 281.212 kb on + strand, within ABIE40_RS27835 at 281.284 kb on - strand, within ABIE40_RS27835 at 281.284 kb on - strand, within ABIE40_RS27835 at 281.287 kb on + strand, within ABIE40_RS27835 at 281.287 kb on + strand, within ABIE40_RS27835 at 281.288 kb on - strand, within ABIE40_RS27835 at 281.386 kb on - strand at 281.419 kb on + strand at 281.419 kb on + strand at 281.420 kb on - strand at 281.424 kb on + strand at 281.424 kb on + strand at 281.424 kb on + strand at 281.425 kb on - strand at 281.425 kb on - strand at 281.436 kb on - strand at 281.436 kb on - strand at 281.516 kb on + strand at 281.517 kb on - strand at 281.517 kb on - strand at 281.675 kb on - strand at 281.691 kb on + strand at 281.691 kb on + strand at 281.691 kb on + strand at 281.692 kb on - strand at 281.783 kb on + strand at 281.783 kb on + strand at 281.783 kb on + strand at 281.783 kb on + strand at 281.783 kb on + strand at 281.784 kb on - strand at 281.784 kb on - strand at 281.784 kb on - strand at 281.784 kb on - strand at 281.784 kb on - strand at 281.795 kb on - strand at 281.795 kb on - strand at 281.795 kb on - strand at 281.795 kb on - strand at 281.795 kb on - strand at 281.797 kb on + strand at 281.797 kb on + strand at 281.797 kb on + strand at 281.797 kb on + strand at 281.798 kb on - strand at 281.798 kb on - strand at 281.802 kb on + strand at 281.803 kb on - strand at 281.964 kb on + strand at 281.964 kb on + strand at 281.964 kb on + strand at 281.964 kb on + strand at 281.965 kb on - strand at 281.965 kb on - strand at 281.965 kb on - strand at 281.965 kb on - strand at 281.966 kb on - strand at 282.013 kb on + strand at 282.014 kb on - strand at 282.120 kb on - strand at 282.363 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 279,902 + ABIE40_RS27830 0.14 -1.2 279,902 + ABIE40_RS27830 0.14 -3.1 279,907 - ABIE40_RS27830 0.14 +1.5 279,907 - ABIE40_RS27830 0.14 -2.3 279,907 - ABIE40_RS27830 0.14 -0.7 279,907 - ABIE40_RS27830 0.14 -0.3 279,907 - ABIE40_RS27830 0.14 -0.6 279,907 - ABIE40_RS27830 0.14 +0.9 279,907 - ABIE40_RS27830 0.14 -1.3 280,005 + ABIE40_RS27830 0.23 -0.1 280,006 - ABIE40_RS27830 0.24 +0.1 280,047 + ABIE40_RS27830 0.27 -0.1 280,048 - ABIE40_RS27830 0.27 +1.4 280,086 + ABIE40_RS27830 0.31 -0.5 280,087 - ABIE40_RS27830 0.31 +0.2 280,113 + ABIE40_RS27830 0.33 -0.3 280,115 + ABIE40_RS27830 0.34 -0.7 280,116 - ABIE40_RS27830 0.34 -0.1 280,200 + ABIE40_RS27830 0.41 +0.2 280,200 + ABIE40_RS27830 0.41 -0.9 280,200 + ABIE40_RS27830 0.41 +1.2 280,201 - ABIE40_RS27830 0.42 -0.2 280,438 - ABIE40_RS27830 0.63 -2.0 280,536 + ABIE40_RS27830 0.72 -1.0 280,536 + ABIE40_RS27830 0.72 +0.3 280,536 + ABIE40_RS27830 0.72 -0.9 280,537 - ABIE40_RS27830 0.72 +0.9 280,537 - ABIE40_RS27830 0.72 +0.5 280,537 - ABIE40_RS27830 0.72 +0.1 280,537 - ABIE40_RS27830 0.72 -0.9 280,537 - ABIE40_RS27830 0.72 -0.8 280,638 + ABIE40_RS27830 0.82 -0.1 280,760 - -0.4 280,780 + +2.5 280,828 + -0.1 280,828 + -0.7 280,828 + -1.5 280,829 - +2.1 280,876 + -1.2 280,876 + -1.7 280,876 + -1.6 280,877 - +1.3 280,877 - +1.2 280,877 - +0.7 280,877 - +1.0 280,877 - +1.6 280,877 - -0.4 280,877 - +0.3 280,944 - ABIE40_RS27835 0.13 -1.0 280,990 + ABIE40_RS27835 0.22 -2.9 281,083 - ABIE40_RS27835 0.39 -1.3 281,192 + ABIE40_RS27835 0.59 -0.0 281,192 + ABIE40_RS27835 0.59 +0.1 281,192 + ABIE40_RS27835 0.59 -1.5 281,212 + ABIE40_RS27835 0.63 -0.6 281,212 + ABIE40_RS27835 0.63 -1.1 281,284 - ABIE40_RS27835 0.77 -0.5 281,284 - ABIE40_RS27835 0.77 +0.8 281,287 + ABIE40_RS27835 0.77 -0.3 281,287 + ABIE40_RS27835 0.77 -1.0 281,288 - ABIE40_RS27835 0.77 -1.9 281,386 - -0.2 281,419 + -1.5 281,419 + +1.8 281,420 - +1.7 281,424 + +0.5 281,424 + -0.3 281,424 + -1.6 281,425 - +0.1 281,425 - +0.9 281,436 - -0.6 281,436 - -2.6 281,516 + -0.5 281,517 - -1.3 281,517 - +0.3 281,675 - -0.5 281,691 + -2.0 281,691 + -1.0 281,691 + -0.3 281,692 - -0.2 281,783 + -2.3 281,783 + +0.8 281,783 + -1.8 281,783 + +1.6 281,783 + -1.3 281,784 - -2.8 281,784 - -0.4 281,784 - -1.7 281,784 - -0.1 281,784 - +1.1 281,795 - -0.5 281,795 - +2.5 281,795 - +0.6 281,795 - -0.6 281,795 - -0.3 281,797 + -2.3 281,797 + -2.6 281,797 + -3.5 281,797 + +2.4 281,798 - +0.4 281,798 - +1.4 281,802 + -0.4 281,803 - +2.7 281,964 + -0.2 281,964 + +1.8 281,964 + -0.7 281,964 + -0.3 281,965 - +0.7 281,965 - +2.0 281,965 - +0.2 281,965 - -0.6 281,966 - -1.6 282,013 + +0.2 282,014 - -0.4 282,120 - -1.3 282,363 - -0.1
Or see this region's nucleotide sequence