Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21845 and ABIE40_RS21850 overlap by 4 nucleotides ABIE40_RS21850 and ABIE40_RS21855 are separated by 1 nucleotides ABIE40_RS21855 and ABIE40_RS21860 are separated by 3 nucleotides ABIE40_RS21860 and ABIE40_RS21865 are separated by 8 nucleotides
ABIE40_RS21845: ABIE40_RS21845 - phosphatidate cytidylyltransferase, at 494,415 to 495,365
_RS21845
ABIE40_RS21850: ABIE40_RS21850 - hypothetical protein, at 495,362 to 495,748
_RS21850
ABIE40_RS21855: ABIE40_RS21855 - CDP-alcohol phosphatidyltransferase family protein, at 495,750 to 496,394
_RS21855
ABIE40_RS21860: ABIE40_RS21860 - PfkB family carbohydrate kinase, at 496,398 to 497,321
_RS21860
ABIE40_RS21865: ABIE40_RS21865 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 497,330 to 498,385
_RS21865
Position (kb) 495
496
497 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 494.769 kb on + strand, within ABIE40_RS21845 at 494.778 kb on + strand, within ABIE40_RS21845 at 494.779 kb on - strand, within ABIE40_RS21845 at 494.779 kb on - strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.799 kb on + strand, within ABIE40_RS21845 at 494.800 kb on - strand, within ABIE40_RS21845 at 494.800 kb on - strand, within ABIE40_RS21845 at 494.800 kb on - strand, within ABIE40_RS21845 at 494.800 kb on - strand, within ABIE40_RS21845 at 494.949 kb on + strand, within ABIE40_RS21845 at 494.950 kb on - strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.018 kb on + strand, within ABIE40_RS21845 at 495.019 kb on - strand, within ABIE40_RS21845 at 495.019 kb on - strand, within ABIE40_RS21845 at 495.263 kb on + strand, within ABIE40_RS21845 at 495.263 kb on + strand, within ABIE40_RS21845 at 495.264 kb on - strand, within ABIE40_RS21845 at 495.345 kb on + strand at 495.562 kb on - strand, within ABIE40_RS21850 at 495.562 kb on - strand, within ABIE40_RS21850 at 495.642 kb on + strand, within ABIE40_RS21850 at 495.642 kb on + strand, within ABIE40_RS21850 at 495.642 kb on + strand, within ABIE40_RS21850 at 495.642 kb on + strand, within ABIE40_RS21850 at 495.642 kb on + strand, within ABIE40_RS21850 at 495.643 kb on - strand, within ABIE40_RS21850 at 495.643 kb on - strand, within ABIE40_RS21850 at 495.643 kb on - strand, within ABIE40_RS21850 at 495.704 kb on + strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.705 kb on - strand, within ABIE40_RS21850 at 495.718 kb on + strand at 495.718 kb on + strand at 495.718 kb on + strand at 495.718 kb on + strand at 495.718 kb on + strand at 495.719 kb on - strand at 495.719 kb on - strand at 495.719 kb on - strand at 495.719 kb on - strand at 495.722 kb on + strand at 495.722 kb on + strand at 495.900 kb on + strand, within ABIE40_RS21855 at 496.158 kb on + strand, within ABIE40_RS21855 at 496.158 kb on + strand, within ABIE40_RS21855 at 496.159 kb on - strand, within ABIE40_RS21855 at 496.399 kb on + strand at 496.400 kb on - strand at 496.400 kb on - strand at 496.543 kb on + strand, within ABIE40_RS21860 at 496.543 kb on + strand, within ABIE40_RS21860 at 496.544 kb on - strand, within ABIE40_RS21860 at 496.544 kb on - strand, within ABIE40_RS21860 at 496.544 kb on - strand, within ABIE40_RS21860 at 496.560 kb on - strand, within ABIE40_RS21860 at 496.577 kb on + strand, within ABIE40_RS21860 at 496.866 kb on + strand, within ABIE40_RS21860 at 496.866 kb on + strand, within ABIE40_RS21860 at 496.867 kb on - strand, within ABIE40_RS21860 at 496.867 kb on - strand, within ABIE40_RS21860 at 496.872 kb on + strand, within ABIE40_RS21860 at 496.973 kb on - strand, within ABIE40_RS21860 at 497.067 kb on + strand, within ABIE40_RS21860 at 497.067 kb on + strand, within ABIE40_RS21860 at 497.067 kb on + strand, within ABIE40_RS21860 at 497.068 kb on - strand, within ABIE40_RS21860 at 497.068 kb on - strand, within ABIE40_RS21860 at 497.095 kb on - strand, within ABIE40_RS21860 at 497.095 kb on - strand, within ABIE40_RS21860 at 497.095 kb on - strand, within ABIE40_RS21860 at 497.095 kb on - strand, within ABIE40_RS21860 at 497.168 kb on - strand, within ABIE40_RS21860 at 497.168 kb on - strand, within ABIE40_RS21860 at 497.168 kb on - strand, within ABIE40_RS21860 at 497.168 kb on - strand, within ABIE40_RS21860 at 497.368 kb on + strand at 497.368 kb on + strand at 497.369 kb on - strand at 497.369 kb on - strand at 497.369 kb on - strand at 497.369 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 494,769 + ABIE40_RS21845 0.37 +0.2 494,778 + ABIE40_RS21845 0.38 +0.4 494,779 - ABIE40_RS21845 0.38 +0.3 494,779 - ABIE40_RS21845 0.38 +1.3 494,799 + ABIE40_RS21845 0.40 -0.1 494,799 + ABIE40_RS21845 0.40 +0.1 494,799 + ABIE40_RS21845 0.40 +0.6 494,799 + ABIE40_RS21845 0.40 -0.3 494,799 + ABIE40_RS21845 0.40 -3.7 494,799 + ABIE40_RS21845 0.40 -0.3 494,799 + ABIE40_RS21845 0.40 -2.5 494,799 + ABIE40_RS21845 0.40 +1.2 494,799 + ABIE40_RS21845 0.40 +0.4 494,800 - ABIE40_RS21845 0.40 -0.3 494,800 - ABIE40_RS21845 0.40 +1.1 494,800 - ABIE40_RS21845 0.40 -2.1 494,800 - ABIE40_RS21845 0.40 +0.2 494,949 + ABIE40_RS21845 0.56 +0.4 494,950 - ABIE40_RS21845 0.56 +1.0 495,018 + ABIE40_RS21845 0.63 +0.2 495,018 + ABIE40_RS21845 0.63 +0.7 495,018 + ABIE40_RS21845 0.63 +0.8 495,018 + ABIE40_RS21845 0.63 -0.7 495,018 + ABIE40_RS21845 0.63 -0.7 495,018 + ABIE40_RS21845 0.63 -0.7 495,018 + ABIE40_RS21845 0.63 -0.5 495,018 + ABIE40_RS21845 0.63 +0.8 495,018 + ABIE40_RS21845 0.63 -0.1 495,018 + ABIE40_RS21845 0.63 +1.1 495,019 - ABIE40_RS21845 0.64 +2.8 495,019 - ABIE40_RS21845 0.64 -1.4 495,263 + ABIE40_RS21845 0.89 -0.4 495,263 + ABIE40_RS21845 0.89 -0.1 495,264 - ABIE40_RS21845 0.89 -1.0 495,345 + -0.1 495,562 - ABIE40_RS21850 0.52 -0.3 495,562 - ABIE40_RS21850 0.52 -0.2 495,642 + ABIE40_RS21850 0.72 +0.7 495,642 + ABIE40_RS21850 0.72 -0.7 495,642 + ABIE40_RS21850 0.72 -0.5 495,642 + ABIE40_RS21850 0.72 -0.0 495,642 + ABIE40_RS21850 0.72 +0.4 495,643 - ABIE40_RS21850 0.73 +1.8 495,643 - ABIE40_RS21850 0.73 -1.1 495,643 - ABIE40_RS21850 0.73 +0.8 495,704 + ABIE40_RS21850 0.88 -0.9 495,705 - ABIE40_RS21850 0.89 -0.5 495,705 - ABIE40_RS21850 0.89 -0.1 495,705 - ABIE40_RS21850 0.89 +0.5 495,705 - ABIE40_RS21850 0.89 -0.3 495,705 - ABIE40_RS21850 0.89 -0.1 495,705 - ABIE40_RS21850 0.89 -0.1 495,718 + +1.0 495,718 + -0.2 495,718 + +0.2 495,718 + +0.4 495,718 + +1.1 495,719 - +0.3 495,719 - -1.1 495,719 - -1.8 495,719 - +1.1 495,722 + +0.6 495,722 + -0.5 495,900 + ABIE40_RS21855 0.23 +1.5 496,158 + ABIE40_RS21855 0.63 -1.2 496,158 + ABIE40_RS21855 0.63 -1.4 496,159 - ABIE40_RS21855 0.63 -3.7 496,399 + -0.7 496,400 - +1.7 496,400 - -0.4 496,543 + ABIE40_RS21860 0.16 -0.5 496,543 + ABIE40_RS21860 0.16 -0.4 496,544 - ABIE40_RS21860 0.16 -0.1 496,544 - ABIE40_RS21860 0.16 +0.5 496,544 - ABIE40_RS21860 0.16 +0.6 496,560 - ABIE40_RS21860 0.18 -1.1 496,577 + ABIE40_RS21860 0.19 +0.1 496,866 + ABIE40_RS21860 0.51 -1.1 496,866 + ABIE40_RS21860 0.51 -1.1 496,867 - ABIE40_RS21860 0.51 -1.1 496,867 - ABIE40_RS21860 0.51 -1.5 496,872 + ABIE40_RS21860 0.51 -0.0 496,973 - ABIE40_RS21860 0.62 -0.7 497,067 + ABIE40_RS21860 0.72 -1.2 497,067 + ABIE40_RS21860 0.72 -2.6 497,067 + ABIE40_RS21860 0.72 -1.0 497,068 - ABIE40_RS21860 0.73 -0.4 497,068 - ABIE40_RS21860 0.73 +1.3 497,095 - ABIE40_RS21860 0.75 -0.9 497,095 - ABIE40_RS21860 0.75 +0.3 497,095 - ABIE40_RS21860 0.75 -2.8 497,095 - ABIE40_RS21860 0.75 -0.6 497,168 - ABIE40_RS21860 0.83 -0.1 497,168 - ABIE40_RS21860 0.83 +1.5 497,168 - ABIE40_RS21860 0.83 -0.6 497,168 - ABIE40_RS21860 0.83 -0.0 497,368 + -1.5 497,368 + -0.5 497,369 - +0.6 497,369 - -0.4 497,369 - -0.8 497,369 - -1.3
Or see this region's nucleotide sequence