Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21195 and ABIE40_RS21200 are separated by 212 nucleotides ABIE40_RS21200 and ABIE40_RS21205 are separated by 7 nucleotides ABIE40_RS21205 and ABIE40_RS21210 are separated by 101 nucleotides
ABIE40_RS21195: ABIE40_RS21195 - ABC transporter permease subunit, at 353,702 to 354,388
_RS21195
ABIE40_RS21200: ABIE40_RS21200 - hypothetical protein, at 354,601 to 355,236
_RS21200
ABIE40_RS21205: ABIE40_RS21205 - PLP-dependent aminotransferase family protein, at 355,244 to 356,572
_RS21205
ABIE40_RS21210: ABIE40_RS21210 - nitrate ABC transporter substrate-binding protein, at 356,674 to 357,654
_RS21210
Position (kb) 355
356
357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 354.275 kb on + strand, within ABIE40_RS21195 at 354.276 kb on - strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.290 kb on + strand, within ABIE40_RS21195 at 354.291 kb on - strand, within ABIE40_RS21195 at 354.291 kb on - strand, within ABIE40_RS21195 at 354.291 kb on - strand, within ABIE40_RS21195 at 354.291 kb on - strand, within ABIE40_RS21195 at 354.291 kb on - strand, within ABIE40_RS21195 at 354.292 kb on + strand, within ABIE40_RS21195 at 354.292 kb on + strand, within ABIE40_RS21195 at 354.292 kb on + strand, within ABIE40_RS21195 at 354.292 kb on + strand, within ABIE40_RS21195 at 354.293 kb on - strand, within ABIE40_RS21195 at 354.293 kb on - strand, within ABIE40_RS21195 at 354.293 kb on - strand, within ABIE40_RS21195 at 354.311 kb on + strand, within ABIE40_RS21195 at 354.312 kb on - strand, within ABIE40_RS21195 at 354.312 kb on - strand, within ABIE40_RS21195 at 354.404 kb on + strand at 354.405 kb on - strand at 354.480 kb on - strand at 354.485 kb on - strand at 354.704 kb on + strand, within ABIE40_RS21200 at 354.704 kb on + strand, within ABIE40_RS21200 at 354.704 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.787 kb on + strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.788 kb on - strand, within ABIE40_RS21200 at 354.832 kb on + strand, within ABIE40_RS21200 at 354.832 kb on + strand, within ABIE40_RS21200 at 354.832 kb on + strand, within ABIE40_RS21200 at 354.832 kb on + strand, within ABIE40_RS21200 at 354.833 kb on - strand, within ABIE40_RS21200 at 354.833 kb on - strand, within ABIE40_RS21200 at 354.833 kb on - strand, within ABIE40_RS21200 at 354.833 kb on - strand, within ABIE40_RS21200 at 354.834 kb on + strand, within ABIE40_RS21200 at 354.835 kb on - strand, within ABIE40_RS21200 at 354.835 kb on - strand, within ABIE40_RS21200 at 354.835 kb on - strand, within ABIE40_RS21200 at 354.889 kb on + strand, within ABIE40_RS21200 at 354.889 kb on + strand, within ABIE40_RS21200 at 354.889 kb on + strand, within ABIE40_RS21200 at 354.889 kb on + strand, within ABIE40_RS21200 at 354.890 kb on - strand, within ABIE40_RS21200 at 354.890 kb on - strand, within ABIE40_RS21200 at 354.890 kb on - strand, within ABIE40_RS21200 at 354.891 kb on + strand, within ABIE40_RS21200 at 354.891 kb on + strand, within ABIE40_RS21200 at 354.891 kb on + strand, within ABIE40_RS21200 at 354.891 kb on + strand, within ABIE40_RS21200 at 354.891 kb on + strand, within ABIE40_RS21200 at 354.892 kb on - strand, within ABIE40_RS21200 at 354.892 kb on - strand, within ABIE40_RS21200 at 354.943 kb on + strand, within ABIE40_RS21200 at 354.943 kb on + strand, within ABIE40_RS21200 at 354.943 kb on + strand, within ABIE40_RS21200 at 354.944 kb on - strand, within ABIE40_RS21200 at 354.944 kb on - strand, within ABIE40_RS21200 at 354.944 kb on - strand, within ABIE40_RS21200 at 355.156 kb on + strand, within ABIE40_RS21200 at 355.234 kb on + strand at 355.235 kb on - strand at 355.433 kb on + strand, within ABIE40_RS21205 at 355.434 kb on - strand, within ABIE40_RS21205 at 355.434 kb on - strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.506 kb on + strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.507 kb on - strand, within ABIE40_RS21205 at 355.614 kb on + strand, within ABIE40_RS21205 at 355.759 kb on + strand, within ABIE40_RS21205 at 355.759 kb on + strand, within ABIE40_RS21205 at 355.759 kb on + strand, within ABIE40_RS21205 at 355.759 kb on + strand, within ABIE40_RS21205 at 355.760 kb on - strand, within ABIE40_RS21205 at 355.792 kb on + strand, within ABIE40_RS21205 at 355.793 kb on - strand, within ABIE40_RS21205 at 355.793 kb on - strand, within ABIE40_RS21205 at 355.793 kb on - strand, within ABIE40_RS21205 at 355.793 kb on - strand, within ABIE40_RS21205 at 355.793 kb on - strand, within ABIE40_RS21205 at 355.798 kb on + strand, within ABIE40_RS21205 at 355.798 kb on + strand, within ABIE40_RS21205 at 355.799 kb on - strand, within ABIE40_RS21205 at 355.799 kb on - strand, within ABIE40_RS21205 at 356.062 kb on + strand, within ABIE40_RS21205 at 356.062 kb on + strand, within ABIE40_RS21205 at 356.062 kb on + strand, within ABIE40_RS21205 at 356.063 kb on - strand, within ABIE40_RS21205 at 356.063 kb on - strand, within ABIE40_RS21205 at 356.063 kb on - strand, within ABIE40_RS21205 at 356.064 kb on + strand, within ABIE40_RS21205 at 356.064 kb on + strand, within ABIE40_RS21205 at 356.065 kb on - strand, within ABIE40_RS21205 at 356.065 kb on - strand, within ABIE40_RS21205 at 356.065 kb on - strand, within ABIE40_RS21205 at 356.077 kb on - strand, within ABIE40_RS21205 at 356.077 kb on - strand, within ABIE40_RS21205 at 356.112 kb on + strand, within ABIE40_RS21205 at 356.113 kb on - strand, within ABIE40_RS21205 at 356.169 kb on + strand, within ABIE40_RS21205 at 356.169 kb on + strand, within ABIE40_RS21205 at 356.169 kb on + strand, within ABIE40_RS21205 at 356.199 kb on + strand, within ABIE40_RS21205 at 356.200 kb on - strand, within ABIE40_RS21205 at 356.277 kb on + strand, within ABIE40_RS21205 at 356.277 kb on + strand, within ABIE40_RS21205 at 356.278 kb on - strand, within ABIE40_RS21205 at 356.278 kb on - strand, within ABIE40_RS21205 at 356.562 kb on - strand at 356.665 kb on + strand at 356.665 kb on + strand at 356.666 kb on - strand at 356.687 kb on + strand at 356.688 kb on - strand at 356.688 kb on - strand at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on + strand at 356.713 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.714 kb on - strand at 356.815 kb on + strand, within ABIE40_RS21210 at 356.815 kb on + strand, within ABIE40_RS21210 at 356.845 kb on + strand, within ABIE40_RS21210 at 357.015 kb on + strand, within ABIE40_RS21210 at 357.016 kb on - strand, within ABIE40_RS21210 at 357.016 kb on - strand, within ABIE40_RS21210 at 357.073 kb on + strand, within ABIE40_RS21210 at 357.074 kb on - strand, within ABIE40_RS21210 at 357.233 kb on - strand, within ABIE40_RS21210 at 357.233 kb on - strand, within ABIE40_RS21210 at 357.295 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.313 kb on + strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.314 kb on - strand, within ABIE40_RS21210 at 357.317 kb on + strand, within ABIE40_RS21210 at 357.317 kb on + strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.318 kb on - strand, within ABIE40_RS21210 at 357.324 kb on + strand, within ABIE40_RS21210 at 357.324 kb on + strand, within ABIE40_RS21210 at 357.439 kb on + strand, within ABIE40_RS21210
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 354,275 + ABIE40_RS21195 0.83 +1.9 354,276 - ABIE40_RS21195 0.84 -0.6 354,290 + ABIE40_RS21195 0.86 +0.8 354,290 + ABIE40_RS21195 0.86 +0.5 354,290 + ABIE40_RS21195 0.86 -0.5 354,290 + ABIE40_RS21195 0.86 -1.4 354,290 + ABIE40_RS21195 0.86 +1.0 354,290 + ABIE40_RS21195 0.86 +0.9 354,290 + ABIE40_RS21195 0.86 -0.2 354,290 + ABIE40_RS21195 0.86 +0.4 354,290 + ABIE40_RS21195 0.86 -0.6 354,291 - ABIE40_RS21195 0.86 -0.6 354,291 - ABIE40_RS21195 0.86 -0.5 354,291 - ABIE40_RS21195 0.86 +0.8 354,291 - ABIE40_RS21195 0.86 -1.1 354,291 - ABIE40_RS21195 0.86 -0.4 354,292 + ABIE40_RS21195 0.86 +0.2 354,292 + ABIE40_RS21195 0.86 +0.3 354,292 + ABIE40_RS21195 0.86 +0.8 354,292 + ABIE40_RS21195 0.86 -0.4 354,293 - ABIE40_RS21195 0.86 +1.7 354,293 - ABIE40_RS21195 0.86 -1.4 354,293 - ABIE40_RS21195 0.86 +0.3 354,311 + ABIE40_RS21195 0.89 -1.0 354,312 - ABIE40_RS21195 0.89 +0.3 354,312 - ABIE40_RS21195 0.89 +2.2 354,404 + -0.4 354,405 - +1.3 354,480 - -0.8 354,485 - +1.1 354,704 + ABIE40_RS21200 0.16 +1.0 354,704 + ABIE40_RS21200 0.16 +1.1 354,704 + ABIE40_RS21200 0.16 -2.7 354,787 + ABIE40_RS21200 0.29 +2.8 354,787 + ABIE40_RS21200 0.29 +1.3 354,787 + ABIE40_RS21200 0.29 +0.3 354,787 + ABIE40_RS21200 0.29 +1.2 354,787 + ABIE40_RS21200 0.29 +0.1 354,787 + ABIE40_RS21200 0.29 +0.3 354,788 - ABIE40_RS21200 0.29 -2.3 354,788 - ABIE40_RS21200 0.29 -2.8 354,788 - ABIE40_RS21200 0.29 -0.7 354,788 - ABIE40_RS21200 0.29 -0.0 354,788 - ABIE40_RS21200 0.29 +1.7 354,788 - ABIE40_RS21200 0.29 -3.5 354,788 - ABIE40_RS21200 0.29 -3.4 354,788 - ABIE40_RS21200 0.29 +1.2 354,788 - ABIE40_RS21200 0.29 -0.3 354,832 + ABIE40_RS21200 0.36 -2.4 354,832 + ABIE40_RS21200 0.36 +0.1 354,832 + ABIE40_RS21200 0.36 -3.2 354,832 + ABIE40_RS21200 0.36 -0.0 354,833 - ABIE40_RS21200 0.36 +0.7 354,833 - ABIE40_RS21200 0.36 +0.9 354,833 - ABIE40_RS21200 0.36 -0.9 354,833 - ABIE40_RS21200 0.36 +0.0 354,834 + ABIE40_RS21200 0.37 +0.2 354,835 - ABIE40_RS21200 0.37 -0.5 354,835 - ABIE40_RS21200 0.37 -0.4 354,835 - ABIE40_RS21200 0.37 +0.4 354,889 + ABIE40_RS21200 0.45 -1.1 354,889 + ABIE40_RS21200 0.45 +0.2 354,889 + ABIE40_RS21200 0.45 -0.7 354,889 + ABIE40_RS21200 0.45 -2.7 354,890 - ABIE40_RS21200 0.45 +1.4 354,890 - ABIE40_RS21200 0.45 +0.3 354,890 - ABIE40_RS21200 0.45 +0.8 354,891 + ABIE40_RS21200 0.46 -2.3 354,891 + ABIE40_RS21200 0.46 -0.8 354,891 + ABIE40_RS21200 0.46 -0.1 354,891 + ABIE40_RS21200 0.46 +1.6 354,891 + ABIE40_RS21200 0.46 -0.0 354,892 - ABIE40_RS21200 0.46 +1.0 354,892 - ABIE40_RS21200 0.46 -2.9 354,943 + ABIE40_RS21200 0.54 -1.9 354,943 + ABIE40_RS21200 0.54 -0.4 354,943 + ABIE40_RS21200 0.54 -1.9 354,944 - ABIE40_RS21200 0.54 -2.2 354,944 - ABIE40_RS21200 0.54 +2.1 354,944 - ABIE40_RS21200 0.54 +1.4 355,156 + ABIE40_RS21200 0.87 -2.9 355,234 + +0.8 355,235 - -2.3 355,433 + ABIE40_RS21205 0.14 +0.9 355,434 - ABIE40_RS21205 0.14 -1.8 355,434 - ABIE40_RS21205 0.14 +0.3 355,506 + ABIE40_RS21205 0.20 -0.9 355,506 + ABIE40_RS21205 0.20 +3.0 355,506 + ABIE40_RS21205 0.20 -0.7 355,506 + ABIE40_RS21205 0.20 -2.8 355,506 + ABIE40_RS21205 0.20 -0.1 355,506 + ABIE40_RS21205 0.20 -1.4 355,507 - ABIE40_RS21205 0.20 -2.1 355,507 - ABIE40_RS21205 0.20 +0.3 355,507 - ABIE40_RS21205 0.20 -1.9 355,507 - ABIE40_RS21205 0.20 +0.4 355,507 - ABIE40_RS21205 0.20 -1.2 355,507 - ABIE40_RS21205 0.20 +0.4 355,614 + ABIE40_RS21205 0.28 -1.7 355,759 + ABIE40_RS21205 0.39 -0.4 355,759 + ABIE40_RS21205 0.39 -1.1 355,759 + ABIE40_RS21205 0.39 -0.8 355,759 + ABIE40_RS21205 0.39 +0.1 355,760 - ABIE40_RS21205 0.39 -3.0 355,792 + ABIE40_RS21205 0.41 +0.0 355,793 - ABIE40_RS21205 0.41 -0.5 355,793 - ABIE40_RS21205 0.41 +0.6 355,793 - ABIE40_RS21205 0.41 -0.1 355,793 - ABIE40_RS21205 0.41 +0.3 355,793 - ABIE40_RS21205 0.41 +0.1 355,798 + ABIE40_RS21205 0.42 -0.9 355,798 + ABIE40_RS21205 0.42 +0.1 355,799 - ABIE40_RS21205 0.42 +2.7 355,799 - ABIE40_RS21205 0.42 +0.4 356,062 + ABIE40_RS21205 0.62 -0.5 356,062 + ABIE40_RS21205 0.62 -0.7 356,062 + ABIE40_RS21205 0.62 +0.6 356,063 - ABIE40_RS21205 0.62 +0.7 356,063 - ABIE40_RS21205 0.62 +0.1 356,063 - ABIE40_RS21205 0.62 +0.0 356,064 + ABIE40_RS21205 0.62 +0.2 356,064 + ABIE40_RS21205 0.62 -0.3 356,065 - ABIE40_RS21205 0.62 -0.3 356,065 - ABIE40_RS21205 0.62 +0.9 356,065 - ABIE40_RS21205 0.62 -0.1 356,077 - ABIE40_RS21205 0.63 +0.2 356,077 - ABIE40_RS21205 0.63 -2.3 356,112 + ABIE40_RS21205 0.65 -0.1 356,113 - ABIE40_RS21205 0.65 -0.5 356,169 + ABIE40_RS21205 0.70 +0.9 356,169 + ABIE40_RS21205 0.70 -1.0 356,169 + ABIE40_RS21205 0.70 -0.2 356,199 + ABIE40_RS21205 0.72 -0.9 356,200 - ABIE40_RS21205 0.72 +1.7 356,277 + ABIE40_RS21205 0.78 -0.5 356,277 + ABIE40_RS21205 0.78 +0.0 356,278 - ABIE40_RS21205 0.78 +0.4 356,278 - ABIE40_RS21205 0.78 -1.0 356,562 - +0.0 356,665 + +0.4 356,665 + +2.3 356,666 - -0.3 356,687 + +0.4 356,688 - +2.1 356,688 - -3.7 356,713 + +0.9 356,713 + -1.0 356,713 + -1.4 356,713 + -0.2 356,713 - +2.4 356,714 - -0.1 356,714 - -0.3 356,714 - +1.1 356,714 - -2.4 356,714 - +1.0 356,815 + ABIE40_RS21210 0.14 +1.2 356,815 + ABIE40_RS21210 0.14 -2.4 356,845 + ABIE40_RS21210 0.17 +0.6 357,015 + ABIE40_RS21210 0.35 -0.3 357,016 - ABIE40_RS21210 0.35 +0.0 357,016 - ABIE40_RS21210 0.35 -0.2 357,073 + ABIE40_RS21210 0.41 -0.1 357,074 - ABIE40_RS21210 0.41 -1.1 357,233 - ABIE40_RS21210 0.57 +0.2 357,233 - ABIE40_RS21210 0.57 -0.7 357,295 + ABIE40_RS21210 0.63 +0.2 357,313 + ABIE40_RS21210 0.65 -0.4 357,313 + ABIE40_RS21210 0.65 +0.6 357,313 + ABIE40_RS21210 0.65 +1.1 357,313 + ABIE40_RS21210 0.65 +0.5 357,314 - ABIE40_RS21210 0.65 -0.9 357,314 - ABIE40_RS21210 0.65 +0.2 357,314 - ABIE40_RS21210 0.65 +0.3 357,314 - ABIE40_RS21210 0.65 -0.1 357,314 - ABIE40_RS21210 0.65 +0.2 357,314 - ABIE40_RS21210 0.65 +0.4 357,317 + ABIE40_RS21210 0.66 -1.7 357,317 + ABIE40_RS21210 0.66 +1.3 357,318 - ABIE40_RS21210 0.66 +3.3 357,318 - ABIE40_RS21210 0.66 -0.7 357,318 - ABIE40_RS21210 0.66 +0.9 357,318 - ABIE40_RS21210 0.66 -0.6 357,318 - ABIE40_RS21210 0.66 -3.2 357,324 + ABIE40_RS21210 0.66 +0.7 357,324 + ABIE40_RS21210 0.66 -0.7 357,439 + ABIE40_RS21210 0.78 +1.9
Or see this region's nucleotide sequence