Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20595

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20585 and ABIE40_RS20590 overlap by 1 nucleotidesABIE40_RS20590 and ABIE40_RS20595 overlap by 4 nucleotidesABIE40_RS20595 and ABIE40_RS20600 are separated by 25 nucleotides ABIE40_RS20585: ABIE40_RS20585 - ANTAR domain-containing protein, at 224,270 to 224,851 _RS20585 ABIE40_RS20590: ABIE40_RS20590 - ABC transporter permease, at 224,851 to 225,699 _RS20590 ABIE40_RS20595: ABIE40_RS20595 - ABC transporter permease, at 225,696 to 226,616 _RS20595 ABIE40_RS20600: ABIE40_RS20600 - ABC transporter substrate-binding protein, at 226,642 to 228,261 _RS20600 Position (kb) 225 226 227Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 225.042 kb on + strand, within ABIE40_RS20590at 225.088 kb on - strand, within ABIE40_RS20590at 225.164 kb on - strand, within ABIE40_RS20590at 225.331 kb on + strand, within ABIE40_RS20590at 225.332 kb on - strand, within ABIE40_RS20590at 225.333 kb on + strand, within ABIE40_RS20590at 225.333 kb on + strand, within ABIE40_RS20590at 225.334 kb on - strand, within ABIE40_RS20590at 225.420 kb on + strand, within ABIE40_RS20590at 225.420 kb on + strand, within ABIE40_RS20590at 225.420 kb on + strand, within ABIE40_RS20590at 225.420 kb on + strand, within ABIE40_RS20590at 225.421 kb on - strand, within ABIE40_RS20590at 225.421 kb on - strand, within ABIE40_RS20590at 225.421 kb on - strand, within ABIE40_RS20590at 225.553 kb on + strand, within ABIE40_RS20590at 225.571 kb on + strand, within ABIE40_RS20590at 225.777 kb on + strandat 225.777 kb on + strandat 225.845 kb on + strand, within ABIE40_RS20595at 225.845 kb on + strand, within ABIE40_RS20595at 225.846 kb on - strand, within ABIE40_RS20595at 225.898 kb on - strand, within ABIE40_RS20595at 225.936 kb on + strand, within ABIE40_RS20595at 225.937 kb on - strand, within ABIE40_RS20595at 225.937 kb on - strand, within ABIE40_RS20595at 226.152 kb on + strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.153 kb on - strand, within ABIE40_RS20595at 226.219 kb on + strand, within ABIE40_RS20595at 226.258 kb on - strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.305 kb on + strand, within ABIE40_RS20595at 226.306 kb on - strand, within ABIE40_RS20595at 226.306 kb on - strand, within ABIE40_RS20595at 226.453 kb on - strand, within ABIE40_RS20595at 226.607 kb on + strandat 226.607 kb on + strandat 226.608 kb on - strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.641 kb on + strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.642 kb on - strandat 226.743 kb on + strandat 226.743 kb on + strandat 226.744 kb on - strandat 226.753 kb on + strandat 226.753 kb on + strandat 226.754 kb on - strandat 226.754 kb on - strandat 226.754 kb on - strandat 226.764 kb on + strandat 226.828 kb on + strand, within ABIE40_RS20600at 226.829 kb on - strand, within ABIE40_RS20600at 226.846 kb on + strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.847 kb on - strand, within ABIE40_RS20600at 226.918 kb on + strand, within ABIE40_RS20600at 226.918 kb on + strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 226.919 kb on - strand, within ABIE40_RS20600at 227.268 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.317 kb on + strand, within ABIE40_RS20600at 227.318 kb on - strand, within ABIE40_RS20600at 227.318 kb on - strand, within ABIE40_RS20600at 227.508 kb on + strand, within ABIE40_RS20600at 227.515 kb on + strand, within ABIE40_RS20600at 227.516 kb on - strand, within ABIE40_RS20600

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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225,042 + ABIE40_RS20590 0.22 +1.8
225,088 - ABIE40_RS20590 0.28 +0.2
225,164 - ABIE40_RS20590 0.37 -1.0
225,331 + ABIE40_RS20590 0.57 -0.2
225,332 - ABIE40_RS20590 0.57 +0.7
225,333 + ABIE40_RS20590 0.57 -0.0
225,333 + ABIE40_RS20590 0.57 -2.9
225,334 - ABIE40_RS20590 0.57 -2.7
225,420 + ABIE40_RS20590 0.67 -0.0
225,420 + ABIE40_RS20590 0.67 +1.3
225,420 + ABIE40_RS20590 0.67 -1.6
225,420 + ABIE40_RS20590 0.67 -0.1
225,421 - ABIE40_RS20590 0.67 +1.8
225,421 - ABIE40_RS20590 0.67 +0.9
225,421 - ABIE40_RS20590 0.67 +0.3
225,553 + ABIE40_RS20590 0.83 +0.8
225,571 + ABIE40_RS20590 0.85 -0.5
225,777 + +0.7
225,777 + -2.2
225,845 + ABIE40_RS20595 0.16 +0.3
225,845 + ABIE40_RS20595 0.16 +1.1
225,846 - ABIE40_RS20595 0.16 -0.2
225,898 - ABIE40_RS20595 0.22 -0.7
225,936 + ABIE40_RS20595 0.26 -0.0
225,937 - ABIE40_RS20595 0.26 +0.6
225,937 - ABIE40_RS20595 0.26 +1.5
226,152 + ABIE40_RS20595 0.50 -0.5
226,153 - ABIE40_RS20595 0.50 +2.1
226,153 - ABIE40_RS20595 0.50 +0.0
226,153 - ABIE40_RS20595 0.50 +1.7
226,219 + ABIE40_RS20595 0.57 -1.4
226,258 - ABIE40_RS20595 0.61 -2.0
226,305 + ABIE40_RS20595 0.66 -1.0
226,305 + ABIE40_RS20595 0.66 -0.3
226,305 + ABIE40_RS20595 0.66 -0.9
226,305 + ABIE40_RS20595 0.66 -0.0
226,305 + ABIE40_RS20595 0.66 +1.9
226,305 + ABIE40_RS20595 0.66 +0.3
226,305 + ABIE40_RS20595 0.66 +0.5
226,305 + ABIE40_RS20595 0.66 +1.1
226,306 - ABIE40_RS20595 0.66 -0.2
226,306 - ABIE40_RS20595 0.66 +0.4
226,453 - ABIE40_RS20595 0.82 +0.9
226,607 + -2.2
226,607 + +0.8
226,608 - -1.2
226,641 + +2.1
226,641 + -0.2
226,641 + -1.3
226,641 + -1.1
226,641 + -2.2
226,641 + -1.0
226,642 - -0.5
226,642 - +0.2
226,642 - +0.1
226,642 - +1.3
226,743 + -3.1
226,743 + +0.5
226,744 - -3.9
226,753 + -1.2
226,753 + +1.0
226,754 - +0.1
226,754 - +1.1
226,754 - -0.2
226,764 + -1.0
226,828 + ABIE40_RS20600 0.11 -0.3
226,829 - ABIE40_RS20600 0.12 -0.2
226,846 + ABIE40_RS20600 0.13 +0.6
226,847 - ABIE40_RS20600 0.13 -1.2
226,847 - ABIE40_RS20600 0.13 -2.2
226,847 - ABIE40_RS20600 0.13 -0.6
226,918 + ABIE40_RS20600 0.17 +0.0
226,918 + ABIE40_RS20600 0.17 -1.5
226,919 - ABIE40_RS20600 0.17 -0.9
226,919 - ABIE40_RS20600 0.17 +0.6
226,919 - ABIE40_RS20600 0.17 -0.5
227,268 + ABIE40_RS20600 0.39 -1.5
227,317 + ABIE40_RS20600 0.42 -1.7
227,317 + ABIE40_RS20600 0.42 -2.2
227,317 + ABIE40_RS20600 0.42 -1.4
227,317 + ABIE40_RS20600 0.42 -2.1
227,317 + ABIE40_RS20600 0.42 +0.8
227,318 - ABIE40_RS20600 0.42 -2.2
227,318 - ABIE40_RS20600 0.42 -1.1
227,508 + ABIE40_RS20600 0.53 -1.3
227,515 + ABIE40_RS20600 0.54 +0.9
227,516 - ABIE40_RS20600 0.54 -0.7

Or see this region's nucleotide sequence