Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04520 and ABIE40_RS04525 are separated by 176 nucleotides ABIE40_RS04525 and ABIE40_RS04530 are separated by 143 nucleotides ABIE40_RS04530 and ABIE40_RS04535 are separated by 174 nucleotides ABIE40_RS04535 and ABIE40_RS04540 are separated by 154 nucleotides
ABIE40_RS04520: ABIE40_RS04520 - betaine-aldehyde dehydrogenase, at 888,258 to 889,721
_RS04520
ABIE40_RS04525: ABIE40_RS04525 - transcriptional regulator BetI, at 889,898 to 890,470
_RS04525
ABIE40_RS04530: ABIE40_RS04530 - HdeD family acid-resistance protein, at 890,614 to 891,165
_RS04530
ABIE40_RS04535: ABIE40_RS04535 - type II toxin-antitoxin system ParD family antitoxin, at 891,340 to 891,582
_RS04535
ABIE40_RS04540: ABIE40_RS04540 - EAL domain-containing protein, at 891,737 to 893,542
_RS04540
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 889.639 kb on + strand at 889.639 kb on + strand at 889.639 kb on + strand at 889.678 kb on + strand at 889.678 kb on + strand at 889.679 kb on - strand at 889.679 kb on - strand at 889.679 kb on - strand at 889.679 kb on - strand at 889.897 kb on + strand at 889.897 kb on + strand at 889.898 kb on - strand at 889.898 kb on - strand at 889.898 kb on - strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.917 kb on + strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.918 kb on - strand at 889.981 kb on + strand, within ABIE40_RS04525 at 889.983 kb on + strand, within ABIE40_RS04525 at 889.983 kb on + strand, within ABIE40_RS04525 at 889.983 kb on + strand, within ABIE40_RS04525 at 889.983 kb on + strand, within ABIE40_RS04525 at 889.983 kb on + strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 889.984 kb on - strand, within ABIE40_RS04525 at 890.091 kb on + strand, within ABIE40_RS04525 at 890.091 kb on + strand, within ABIE40_RS04525 at 890.091 kb on + strand, within ABIE40_RS04525 at 890.091 kb on + strand, within ABIE40_RS04525 at 890.091 kb on + strand, within ABIE40_RS04525 at 890.092 kb on - strand, within ABIE40_RS04525 at 890.092 kb on - strand, within ABIE40_RS04525 at 890.092 kb on - strand, within ABIE40_RS04525 at 890.092 kb on - strand, within ABIE40_RS04525 at 890.092 kb on - strand, within ABIE40_RS04525 at 890.139 kb on + strand, within ABIE40_RS04525 at 890.140 kb on - strand, within ABIE40_RS04525 at 890.140 kb on - strand, within ABIE40_RS04525 at 890.231 kb on - strand, within ABIE40_RS04525 at 890.276 kb on + strand, within ABIE40_RS04525 at 890.276 kb on + strand, within ABIE40_RS04525 at 890.288 kb on + strand, within ABIE40_RS04525 at 890.289 kb on - strand, within ABIE40_RS04525 at 890.289 kb on - strand, within ABIE40_RS04525 at 890.289 kb on - strand, within ABIE40_RS04525 at 890.289 kb on - strand, within ABIE40_RS04525 at 890.325 kb on + strand, within ABIE40_RS04525 at 890.326 kb on - strand, within ABIE40_RS04525 at 890.326 kb on - strand, within ABIE40_RS04525 at 890.326 kb on - strand, within ABIE40_RS04525 at 890.505 kb on - strand at 890.505 kb on - strand at 890.529 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.588 kb on + strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.589 kb on - strand at 890.749 kb on + strand, within ABIE40_RS04530 at 890.749 kb on + strand, within ABIE40_RS04530 at 890.749 kb on + strand, within ABIE40_RS04530 at 890.749 kb on + strand, within ABIE40_RS04530 at 890.749 kb on + strand, within ABIE40_RS04530 at 890.749 kb on + strand, within ABIE40_RS04530 at 890.750 kb on - strand, within ABIE40_RS04530 at 890.750 kb on - strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.752 kb on + strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.753 kb on - strand, within ABIE40_RS04530 at 890.788 kb on + strand, within ABIE40_RS04530 at 890.789 kb on - strand, within ABIE40_RS04530 at 890.857 kb on + strand, within ABIE40_RS04530 at 890.857 kb on + strand, within ABIE40_RS04530 at 890.857 kb on + strand, within ABIE40_RS04530 at 890.857 kb on + strand, within ABIE40_RS04530 at 890.857 kb on + strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 890.858 kb on - strand, within ABIE40_RS04530 at 891.149 kb on + strand at 891.161 kb on + strand at 891.161 kb on + strand at 891.162 kb on - strand at 891.162 kb on - strand at 891.162 kb on - strand at 891.162 kb on - strand at 891.169 kb on + strand at 891.169 kb on + strand at 891.214 kb on + strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.215 kb on - strand at 891.240 kb on + strand at 891.241 kb on - strand at 891.241 kb on - strand at 891.269 kb on + strand at 891.371 kb on + strand, within ABIE40_RS04535 at 891.371 kb on + strand, within ABIE40_RS04535 at 891.371 kb on + strand, within ABIE40_RS04535 at 891.492 kb on + strand, within ABIE40_RS04535 at 891.493 kb on - strand, within ABIE40_RS04535 at 891.711 kb on + strand at 891.711 kb on + strand at 891.780 kb on - strand at 891.808 kb on + strand at 891.808 kb on + strand at 891.808 kb on + strand at 891.808 kb on + strand at 891.808 kb on + strand at 891.809 kb on - strand at 891.809 kb on - strand at 891.809 kb on - strand at 891.819 kb on + strand at 891.865 kb on - strand at 891.868 kb on - strand at 891.941 kb on + strand, within ABIE40_RS04540 at 891.941 kb on + strand, within ABIE40_RS04540 at 891.941 kb on + strand, within ABIE40_RS04540 at 892.019 kb on + strand, within ABIE40_RS04540 at 892.019 kb on + strand, within ABIE40_RS04540 at 892.020 kb on - strand, within ABIE40_RS04540 at 892.020 kb on - strand, within ABIE40_RS04540 at 892.165 kb on + strand, within ABIE40_RS04540 at 892.165 kb on + strand, within ABIE40_RS04540
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 889,639 + +0.3 889,639 + -0.5 889,639 + -1.0 889,678 + +0.7 889,678 + -3.7 889,679 - -0.8 889,679 - +0.3 889,679 - +1.3 889,679 - -0.2 889,897 + +0.2 889,897 + -2.2 889,898 - -0.1 889,898 - -1.8 889,898 - +0.9 889,917 + -0.9 889,917 + -1.9 889,917 + +2.0 889,917 + -0.7 889,917 + -0.2 889,917 + -1.3 889,917 + -1.0 889,917 + -0.0 889,917 + +0.8 889,917 + -1.3 889,917 + +0.3 889,917 + -0.8 889,917 + +1.5 889,917 + -0.0 889,917 + -0.3 889,918 - -0.5 889,918 - +0.3 889,918 - +0.0 889,918 - -0.1 889,918 - -1.5 889,918 - -0.8 889,918 - -0.2 889,918 - -0.3 889,918 - +0.2 889,918 - -1.4 889,918 - -0.9 889,918 - +0.3 889,981 + ABIE40_RS04525 0.14 -0.0 889,983 + ABIE40_RS04525 0.15 -1.5 889,983 + ABIE40_RS04525 0.15 -2.4 889,983 + ABIE40_RS04525 0.15 -2.3 889,983 + ABIE40_RS04525 0.15 -0.1 889,983 + ABIE40_RS04525 0.15 -0.1 889,984 - ABIE40_RS04525 0.15 +0.0 889,984 - ABIE40_RS04525 0.15 +0.6 889,984 - ABIE40_RS04525 0.15 +0.0 889,984 - ABIE40_RS04525 0.15 -0.5 889,984 - ABIE40_RS04525 0.15 +1.5 889,984 - ABIE40_RS04525 0.15 -0.2 889,984 - ABIE40_RS04525 0.15 -0.8 890,091 + ABIE40_RS04525 0.34 -1.3 890,091 + ABIE40_RS04525 0.34 +0.3 890,091 + ABIE40_RS04525 0.34 +1.5 890,091 + ABIE40_RS04525 0.34 -1.2 890,091 + ABIE40_RS04525 0.34 -1.6 890,092 - ABIE40_RS04525 0.34 +0.5 890,092 - ABIE40_RS04525 0.34 +0.4 890,092 - ABIE40_RS04525 0.34 -2.0 890,092 - ABIE40_RS04525 0.34 -0.3 890,092 - ABIE40_RS04525 0.34 -1.2 890,139 + ABIE40_RS04525 0.42 -1.6 890,140 - ABIE40_RS04525 0.42 +1.5 890,140 - ABIE40_RS04525 0.42 -0.1 890,231 - ABIE40_RS04525 0.58 +1.5 890,276 + ABIE40_RS04525 0.66 -0.5 890,276 + ABIE40_RS04525 0.66 -0.5 890,288 + ABIE40_RS04525 0.68 +0.2 890,289 - ABIE40_RS04525 0.68 -0.1 890,289 - ABIE40_RS04525 0.68 -0.7 890,289 - ABIE40_RS04525 0.68 -2.5 890,289 - ABIE40_RS04525 0.68 +0.0 890,325 + ABIE40_RS04525 0.75 -1.4 890,326 - ABIE40_RS04525 0.75 +0.3 890,326 - ABIE40_RS04525 0.75 -0.0 890,326 - ABIE40_RS04525 0.75 +0.7 890,505 - -0.0 890,505 - -0.6 890,529 + -0.3 890,588 + -1.1 890,588 + +0.1 890,588 + -2.5 890,588 + +0.6 890,588 + -0.3 890,588 + +0.9 890,588 + -2.0 890,589 - -1.0 890,589 - -0.8 890,589 - +0.0 890,589 - +0.3 890,589 - -0.5 890,589 - +1.3 890,589 - +0.4 890,589 - -1.2 890,589 - +0.8 890,589 - +0.6 890,749 + ABIE40_RS04530 0.24 +0.1 890,749 + ABIE40_RS04530 0.24 -0.4 890,749 + ABIE40_RS04530 0.24 -0.2 890,749 + ABIE40_RS04530 0.24 -1.4 890,749 + ABIE40_RS04530 0.24 +2.1 890,749 + ABIE40_RS04530 0.24 +2.4 890,750 - ABIE40_RS04530 0.25 +0.4 890,750 - ABIE40_RS04530 0.25 +1.1 890,752 + ABIE40_RS04530 0.25 +1.1 890,752 + ABIE40_RS04530 0.25 -0.3 890,752 + ABIE40_RS04530 0.25 +3.1 890,752 + ABIE40_RS04530 0.25 -1.5 890,752 + ABIE40_RS04530 0.25 +1.0 890,752 + ABIE40_RS04530 0.25 +0.2 890,753 - ABIE40_RS04530 0.25 +0.4 890,753 - ABIE40_RS04530 0.25 +1.8 890,753 - ABIE40_RS04530 0.25 -4.2 890,753 - ABIE40_RS04530 0.25 +1.0 890,753 - ABIE40_RS04530 0.25 +0.6 890,753 - ABIE40_RS04530 0.25 +0.2 890,753 - ABIE40_RS04530 0.25 +0.4 890,753 - ABIE40_RS04530 0.25 +0.1 890,753 - ABIE40_RS04530 0.25 -0.2 890,788 + ABIE40_RS04530 0.32 -1.4 890,789 - ABIE40_RS04530 0.32 +0.0 890,857 + ABIE40_RS04530 0.44 +0.3 890,857 + ABIE40_RS04530 0.44 -0.9 890,857 + ABIE40_RS04530 0.44 -1.3 890,857 + ABIE40_RS04530 0.44 -3.5 890,857 + ABIE40_RS04530 0.44 +4.1 890,858 - ABIE40_RS04530 0.44 -2.9 890,858 - ABIE40_RS04530 0.44 +0.5 890,858 - ABIE40_RS04530 0.44 -2.7 890,858 - ABIE40_RS04530 0.44 +0.0 890,858 - ABIE40_RS04530 0.44 -1.6 890,858 - ABIE40_RS04530 0.44 -0.1 890,858 - ABIE40_RS04530 0.44 -0.0 891,149 + +1.0 891,161 + -2.1 891,161 + +0.3 891,162 - -2.3 891,162 - -0.4 891,162 - -1.9 891,162 - -0.3 891,169 + +0.2 891,169 + -2.3 891,214 + -0.8 891,215 - -0.3 891,215 - -1.3 891,215 - -0.7 891,215 - -0.3 891,240 + -0.2 891,241 - +0.2 891,241 - +1.5 891,269 + -1.5 891,371 + ABIE40_RS04535 0.13 -0.4 891,371 + ABIE40_RS04535 0.13 -0.3 891,371 + ABIE40_RS04535 0.13 +1.3 891,492 + ABIE40_RS04535 0.63 -1.0 891,493 - ABIE40_RS04535 0.63 +2.5 891,711 + -0.8 891,711 + -2.5 891,780 - -2.5 891,808 + +0.1 891,808 + -1.6 891,808 + -0.2 891,808 + +0.7 891,808 + -2.5 891,809 - -1.5 891,809 - -1.4 891,809 - +0.2 891,819 + -2.0 891,865 - -1.0 891,868 - -0.6 891,941 + ABIE40_RS04540 0.11 -2.4 891,941 + ABIE40_RS04540 0.11 -0.6 891,941 + ABIE40_RS04540 0.11 +1.7 892,019 + ABIE40_RS04540 0.16 -1.5 892,019 + ABIE40_RS04540 0.16 -0.2 892,020 - ABIE40_RS04540 0.16 +0.5 892,020 - ABIE40_RS04540 0.16 -0.3 892,165 + ABIE40_RS04540 0.24 -2.0 892,165 + ABIE40_RS04540 0.24 -2.2
Or see this region's nucleotide sequence