Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01590

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01580 and ABIE40_RS01585 are separated by 5 nucleotidesABIE40_RS01585 and ABIE40_RS01590 are separated by 152 nucleotidesABIE40_RS01590 and ABIE40_RS01595 are separated by 10 nucleotidesABIE40_RS01595 and ABIE40_RS01600 are separated by 193 nucleotides ABIE40_RS01580: ABIE40_RS01580 - 2-polyprenylphenol 6-hydroxylase, at 311,599 to 313,173 _RS01580 ABIE40_RS01585: ABIE40_RS01585 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 313,179 to 313,955 _RS01585 ABIE40_RS01590: ABIE40_RS01590 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 314,108 to 314,998 _RS01590 ABIE40_RS01595: ABIE40_RS01595 - enoyl-CoA hydratase, at 315,009 to 315,782 _RS01595 ABIE40_RS01600: ABIE40_RS01600 - 30S ribosomal protein S20, at 315,976 to 316,255 _RS01600 Position (kb) 314 315Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 313.181 kb on - strandat 314.017 kb on - strandat 314.017 kb on - strandat 314.017 kb on - strandat 314.023 kb on - strandat 314.023 kb on - strandat 314.059 kb on - strandat 314.059 kb on - strandat 314.093 kb on + strandat 314.094 kb on - strandat 314.094 kb on - strandat 314.094 kb on - strandat 314.283 kb on - strand, within ABIE40_RS01590at 314.283 kb on - strand, within ABIE40_RS01590at 314.283 kb on - strand, within ABIE40_RS01590at 314.350 kb on + strand, within ABIE40_RS01590at 314.351 kb on - strand, within ABIE40_RS01590at 314.352 kb on + strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.353 kb on - strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.471 kb on + strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.472 kb on - strand, within ABIE40_RS01590at 314.474 kb on - strand, within ABIE40_RS01590at 314.474 kb on - strand, within ABIE40_RS01590at 314.503 kb on + strand, within ABIE40_RS01590at 314.588 kb on + strand, within ABIE40_RS01590at 314.588 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.671 kb on + strand, within ABIE40_RS01590at 314.672 kb on - strand, within ABIE40_RS01590at 314.672 kb on - strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.675 kb on + strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.676 kb on - strand, within ABIE40_RS01590at 314.812 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.891 kb on + strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.892 kb on - strand, within ABIE40_RS01590at 314.930 kb on - strandat 314.935 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.975 kb on + strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 314.976 kb on - strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.015 kb on + strandat 315.016 kb on - strandat 315.126 kb on + strand, within ABIE40_RS01595at 315.127 kb on - strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.239 kb on + strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.240 kb on - strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.241 kb on + strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.242 kb on - strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.243 kb on + strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.244 kb on - strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.245 kb on + strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595at 315.246 kb on - strand, within ABIE40_RS01595

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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313,181 - +0.0
314,017 - -2.2
314,017 - +0.0
314,017 - -0.3
314,023 - -0.8
314,023 - -0.8
314,059 - +0.4
314,059 - +2.4
314,093 + -1.7
314,094 - -0.6
314,094 - -0.2
314,094 - +0.1
314,283 - ABIE40_RS01590 0.20 +0.8
314,283 - ABIE40_RS01590 0.20 -1.4
314,283 - ABIE40_RS01590 0.20 -0.2
314,350 + ABIE40_RS01590 0.27 -2.7
314,351 - ABIE40_RS01590 0.27 -0.0
314,352 + ABIE40_RS01590 0.27 +0.2
314,353 - ABIE40_RS01590 0.27 +1.5
314,353 - ABIE40_RS01590 0.27 -2.3
314,353 - ABIE40_RS01590 0.27 -0.5
314,471 + ABIE40_RS01590 0.41 -1.4
314,471 + ABIE40_RS01590 0.41 +0.6
314,471 + ABIE40_RS01590 0.41 +0.2
314,471 + ABIE40_RS01590 0.41 +0.5
314,471 + ABIE40_RS01590 0.41 -3.4
314,472 - ABIE40_RS01590 0.41 -0.9
314,472 - ABIE40_RS01590 0.41 -1.8
314,472 - ABIE40_RS01590 0.41 +0.6
314,472 - ABIE40_RS01590 0.41 +1.2
314,472 - ABIE40_RS01590 0.41 -1.0
314,472 - ABIE40_RS01590 0.41 -3.1
314,472 - ABIE40_RS01590 0.41 -0.0
314,472 - ABIE40_RS01590 0.41 +0.4
314,472 - ABIE40_RS01590 0.41 +0.4
314,472 - ABIE40_RS01590 0.41 -1.7
314,472 - ABIE40_RS01590 0.41 -0.1
314,474 - ABIE40_RS01590 0.41 +0.5
314,474 - ABIE40_RS01590 0.41 +0.7
314,503 + ABIE40_RS01590 0.44 -1.0
314,588 + ABIE40_RS01590 0.54 +0.2
314,588 + ABIE40_RS01590 0.54 +0.6
314,671 + ABIE40_RS01590 0.63 -1.4
314,671 + ABIE40_RS01590 0.63 -2.0
314,671 + ABIE40_RS01590 0.63 +0.3
314,671 + ABIE40_RS01590 0.63 +0.3
314,672 - ABIE40_RS01590 0.63 +0.1
314,672 - ABIE40_RS01590 0.63 -0.6
314,675 + ABIE40_RS01590 0.64 -0.8
314,675 + ABIE40_RS01590 0.64 -0.8
314,675 + ABIE40_RS01590 0.64 +0.8
314,675 + ABIE40_RS01590 0.64 -0.6
314,675 + ABIE40_RS01590 0.64 -0.7
314,675 + ABIE40_RS01590 0.64 -0.1
314,675 + ABIE40_RS01590 0.64 -0.7
314,675 + ABIE40_RS01590 0.64 -2.4
314,675 + ABIE40_RS01590 0.64 -2.2
314,675 + ABIE40_RS01590 0.64 -2.3
314,675 + ABIE40_RS01590 0.64 -0.6
314,675 + ABIE40_RS01590 0.64 +1.9
314,675 + ABIE40_RS01590 0.64 -0.6
314,675 + ABIE40_RS01590 0.64 +0.5
314,675 + ABIE40_RS01590 0.64 -0.1
314,675 + ABIE40_RS01590 0.64 +0.4
314,676 - ABIE40_RS01590 0.64 -2.4
314,676 - ABIE40_RS01590 0.64 +0.8
314,676 - ABIE40_RS01590 0.64 -0.3
314,676 - ABIE40_RS01590 0.64 -0.8
314,676 - ABIE40_RS01590 0.64 -0.7
314,676 - ABIE40_RS01590 0.64 +1.0
314,676 - ABIE40_RS01590 0.64 -1.7
314,676 - ABIE40_RS01590 0.64 +0.1
314,676 - ABIE40_RS01590 0.64 -1.1
314,676 - ABIE40_RS01590 0.64 +0.8
314,676 - ABIE40_RS01590 0.64 -1.0
314,676 - ABIE40_RS01590 0.64 +0.8
314,676 - ABIE40_RS01590 0.64 -0.1
314,676 - ABIE40_RS01590 0.64 +4.4
314,676 - ABIE40_RS01590 0.64 +0.3
314,676 - ABIE40_RS01590 0.64 +0.8
314,812 + ABIE40_RS01590 0.79 -1.9
314,891 + ABIE40_RS01590 0.88 -0.7
314,891 + ABIE40_RS01590 0.88 -0.8
314,891 + ABIE40_RS01590 0.88 +0.6
314,891 + ABIE40_RS01590 0.88 +1.3
314,892 - ABIE40_RS01590 0.88 +0.2
314,892 - ABIE40_RS01590 0.88 -0.1
314,892 - ABIE40_RS01590 0.88 -0.6
314,892 - ABIE40_RS01590 0.88 -0.5
314,892 - ABIE40_RS01590 0.88 -0.1
314,930 - -0.1
314,935 + +2.4
314,975 + +1.8
314,975 + -0.1
314,975 + -1.2
314,975 + +1.1
314,975 + +0.9
314,975 + -2.7
314,976 - -0.3
314,976 - -1.5
314,976 - +3.4
314,976 - +0.9
314,976 - +0.6
314,976 - +0.7
314,976 - -1.1
315,015 + +1.0
315,015 + +2.1
315,015 + -0.6
315,015 + -2.0
315,016 - -0.2
315,126 + ABIE40_RS01595 0.15 -1.3
315,127 - ABIE40_RS01595 0.15 +0.0
315,239 + ABIE40_RS01595 0.30 -2.4
315,239 + ABIE40_RS01595 0.30 +1.8
315,239 + ABIE40_RS01595 0.30 -0.0
315,239 + ABIE40_RS01595 0.30 -0.7
315,239 + ABIE40_RS01595 0.30 +0.5
315,239 + ABIE40_RS01595 0.30 +0.2
315,239 + ABIE40_RS01595 0.30 +0.5
315,239 + ABIE40_RS01595 0.30 +1.1
315,239 + ABIE40_RS01595 0.30 +0.1
315,240 - ABIE40_RS01595 0.30 -0.8
315,240 - ABIE40_RS01595 0.30 +2.1
315,240 - ABIE40_RS01595 0.30 +1.0
315,241 + ABIE40_RS01595 0.30 -0.7
315,241 + ABIE40_RS01595 0.30 -0.5
315,241 + ABIE40_RS01595 0.30 -1.1
315,241 + ABIE40_RS01595 0.30 -2.3
315,241 + ABIE40_RS01595 0.30 -0.7
315,241 + ABIE40_RS01595 0.30 +0.2
315,241 + ABIE40_RS01595 0.30 -0.3
315,242 - ABIE40_RS01595 0.30 -0.5
315,242 - ABIE40_RS01595 0.30 -0.7
315,242 - ABIE40_RS01595 0.30 +2.8
315,242 - ABIE40_RS01595 0.30 +0.7
315,242 - ABIE40_RS01595 0.30 -0.2
315,242 - ABIE40_RS01595 0.30 -2.2
315,242 - ABIE40_RS01595 0.30 -0.8
315,242 - ABIE40_RS01595 0.30 +2.0
315,242 - ABIE40_RS01595 0.30 -0.5
315,242 - ABIE40_RS01595 0.30 -0.4
315,242 - ABIE40_RS01595 0.30 -2.1
315,242 - ABIE40_RS01595 0.30 -1.2
315,242 - ABIE40_RS01595 0.30 +0.5
315,242 - ABIE40_RS01595 0.30 +0.2
315,242 - ABIE40_RS01595 0.30 +0.8
315,242 - ABIE40_RS01595 0.30 -3.3
315,242 - ABIE40_RS01595 0.30 -0.0
315,242 - ABIE40_RS01595 0.30 -2.5
315,242 - ABIE40_RS01595 0.30 -1.2
315,242 - ABIE40_RS01595 0.30 -0.2
315,243 + ABIE40_RS01595 0.30 -1.1
315,243 + ABIE40_RS01595 0.30 +0.6
315,243 + ABIE40_RS01595 0.30 -2.1
315,243 + ABIE40_RS01595 0.30 -1.4
315,243 + ABIE40_RS01595 0.30 -1.6
315,243 + ABIE40_RS01595 0.30 +0.5
315,243 + ABIE40_RS01595 0.30 +0.3
315,243 + ABIE40_RS01595 0.30 -1.2
315,243 + ABIE40_RS01595 0.30 +0.9
315,243 + ABIE40_RS01595 0.30 +0.2
315,243 + ABIE40_RS01595 0.30 -2.9
315,243 + ABIE40_RS01595 0.30 -1.5
315,243 + ABIE40_RS01595 0.30 -1.2
315,243 + ABIE40_RS01595 0.30 +0.3
315,243 + ABIE40_RS01595 0.30 +3.8
315,244 - ABIE40_RS01595 0.30 +2.0
315,244 - ABIE40_RS01595 0.30 -3.0
315,244 - ABIE40_RS01595 0.30 -0.5
315,244 - ABIE40_RS01595 0.30 -2.7
315,244 - ABIE40_RS01595 0.30 +0.1
315,245 + ABIE40_RS01595 0.30 +0.2
315,245 + ABIE40_RS01595 0.30 +0.9
315,245 + ABIE40_RS01595 0.30 -0.8
315,245 + ABIE40_RS01595 0.30 -0.3
315,245 + ABIE40_RS01595 0.30 -1.2
315,245 + ABIE40_RS01595 0.30 +1.4
315,245 + ABIE40_RS01595 0.30 +1.9
315,245 + ABIE40_RS01595 0.30 -1.0
315,246 - ABIE40_RS01595 0.31 -0.6
315,246 - ABIE40_RS01595 0.31 -1.8
315,246 - ABIE40_RS01595 0.31 -1.9
315,246 - ABIE40_RS01595 0.31 -3.9
315,246 - ABIE40_RS01595 0.31 -1.8
315,246 - ABIE40_RS01595 0.31 +0.2
315,246 - ABIE40_RS01595 0.31 +0.2
315,246 - ABIE40_RS01595 0.31 -1.6
315,246 - ABIE40_RS01595 0.31 -2.0
315,246 - ABIE40_RS01595 0.31 +0.6
315,246 - ABIE40_RS01595 0.31 -1.7
315,246 - ABIE40_RS01595 0.31 -2.0

Or see this region's nucleotide sequence