Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00755 and ABIE40_RS00760 are separated by 506 nucleotides ABIE40_RS00760 and ABIE40_RS00765 overlap by 4 nucleotides ABIE40_RS00765 and ABIE40_RS00770 are separated by 173 nucleotides ABIE40_RS00770 and ABIE40_RS00775 are separated by 226 nucleotides
ABIE40_RS00755: ABIE40_RS00755 - hypothetical protein, at 160,193 to 160,696
_RS00755
ABIE40_RS00760: ABIE40_RS00760 - hypothetical protein, at 161,203 to 161,451
_RS00760
ABIE40_RS00765: ABIE40_RS00765 - pyocin activator PrtN family protein, at 161,448 to 161,732
_RS00765
ABIE40_RS00770: ABIE40_RS00770 - tRNA-Ser, at 161,906 to 161,995
_RS00770
ABIE40_RS00775: ABIE40_RS00775 - hypothetical protein, at 162,222 to 162,539
_RS00775
Position (kb) 161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 160.203 kb on + strand at 160.203 kb on + strand at 160.203 kb on + strand at 160.203 kb on + strand at 160.203 kb on + strand at 160.204 kb on - strand at 160.204 kb on - strand at 160.204 kb on - strand at 160.204 kb on - strand at 160.210 kb on - strand at 160.289 kb on + strand, within ABIE40_RS00755 at 160.289 kb on + strand, within ABIE40_RS00755 at 160.289 kb on + strand, within ABIE40_RS00755 at 160.289 kb on + strand, within ABIE40_RS00755 at 160.289 kb on + strand, within ABIE40_RS00755 at 160.289 kb on + strand, within ABIE40_RS00755 at 160.290 kb on - strand, within ABIE40_RS00755 at 160.290 kb on - strand, within ABIE40_RS00755 at 160.290 kb on - strand, within ABIE40_RS00755 at 160.290 kb on - strand, within ABIE40_RS00755 at 160.290 kb on - strand, within ABIE40_RS00755 at 160.468 kb on + strand, within ABIE40_RS00755 at 160.468 kb on + strand, within ABIE40_RS00755 at 160.469 kb on - strand, within ABIE40_RS00755 at 160.469 kb on - strand, within ABIE40_RS00755 at 160.474 kb on - strand, within ABIE40_RS00755 at 160.474 kb on - strand, within ABIE40_RS00755 at 160.522 kb on + strand, within ABIE40_RS00755 at 160.522 kb on + strand, within ABIE40_RS00755 at 160.523 kb on - strand, within ABIE40_RS00755 at 160.542 kb on - strand, within ABIE40_RS00755 at 160.542 kb on - strand, within ABIE40_RS00755 at 160.554 kb on + strand, within ABIE40_RS00755 at 160.554 kb on + strand, within ABIE40_RS00755 at 160.554 kb on + strand, within ABIE40_RS00755 at 160.555 kb on - strand, within ABIE40_RS00755 at 160.555 kb on - strand, within ABIE40_RS00755 at 160.555 kb on - strand, within ABIE40_RS00755 at 160.607 kb on + strand, within ABIE40_RS00755 at 160.607 kb on + strand, within ABIE40_RS00755 at 160.626 kb on - strand, within ABIE40_RS00755 at 160.626 kb on - strand, within ABIE40_RS00755 at 160.679 kb on - strand at 160.686 kb on + strand at 160.700 kb on + strand at 160.700 kb on + strand at 160.700 kb on + strand at 160.700 kb on + strand at 160.701 kb on - strand at 160.701 kb on - strand at 160.719 kb on + strand at 160.719 kb on + strand at 160.719 kb on + strand at 160.720 kb on - strand at 160.720 kb on - strand at 160.720 kb on - strand at 160.720 kb on - strand at 160.738 kb on - strand at 160.796 kb on - strand at 160.796 kb on - strand at 160.796 kb on - strand at 160.813 kb on - strand at 160.863 kb on + strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.864 kb on - strand at 160.873 kb on - strand at 160.898 kb on - strand at 160.915 kb on - strand at 160.934 kb on + strand at 160.934 kb on + strand at 160.934 kb on + strand at 160.934 kb on + strand at 160.935 kb on - strand at 160.935 kb on - strand at 160.935 kb on - strand at 160.935 kb on - strand at 160.935 kb on - strand at 160.935 kb on - strand at 161.036 kb on + strand at 161.218 kb on - strand at 161.220 kb on - strand at 161.295 kb on - strand, within ABIE40_RS00760 at 161.301 kb on - strand, within ABIE40_RS00760 at 161.320 kb on - strand, within ABIE40_RS00760 at 161.363 kb on + strand, within ABIE40_RS00760 at 161.363 kb on + strand, within ABIE40_RS00760 at 161.364 kb on - strand, within ABIE40_RS00760 at 161.364 kb on - strand, within ABIE40_RS00760 at 161.429 kb on - strand at 161.429 kb on - strand at 161.467 kb on + strand at 161.468 kb on - strand at 161.478 kb on + strand, within ABIE40_RS00765 at 161.478 kb on + strand, within ABIE40_RS00765 at 161.513 kb on - strand, within ABIE40_RS00765 at 161.528 kb on + strand, within ABIE40_RS00765 at 161.529 kb on - strand, within ABIE40_RS00765 at 161.536 kb on + strand, within ABIE40_RS00765 at 161.537 kb on - strand, within ABIE40_RS00765 at 161.537 kb on - strand, within ABIE40_RS00765 at 161.652 kb on + strand, within ABIE40_RS00765 at 161.652 kb on + strand, within ABIE40_RS00765 at 161.653 kb on - strand, within ABIE40_RS00765 at 161.662 kb on + strand, within ABIE40_RS00765 at 161.662 kb on + strand, within ABIE40_RS00765 at 161.662 kb on + strand, within ABIE40_RS00765 at 161.663 kb on - strand, within ABIE40_RS00765 at 161.663 kb on - strand, within ABIE40_RS00765 at 161.717 kb on + strand at 161.717 kb on + strand at 161.731 kb on - strand at 161.731 kb on - strand at 161.731 kb on - strand at 161.781 kb on + strand at 161.797 kb on - strand at 161.892 kb on + strand at 161.892 kb on + strand at 161.892 kb on + strand at 161.893 kb on - strand at 161.893 kb on - strand at 161.904 kb on + strand at 162.105 kb on - strand at 162.150 kb on + strand at 162.150 kb on + strand at 162.150 kb on + strand at 162.150 kb on + strand at 162.150 kb on + strand at 162.150 kb on + strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.151 kb on - strand at 162.221 kb on + strand at 162.221 kb on + strand at 162.245 kb on + strand at 162.396 kb on + strand, within ABIE40_RS00775 at 162.396 kb on + strand, within ABIE40_RS00775 at 162.397 kb on - strand, within ABIE40_RS00775 at 162.397 kb on - strand, within ABIE40_RS00775 at 162.397 kb on - strand, within ABIE40_RS00775 at 162.397 kb on - strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.399 kb on + strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.400 kb on - strand, within ABIE40_RS00775 at 162.401 kb on + strand, within ABIE40_RS00775 at 162.401 kb on + strand, within ABIE40_RS00775 at 162.401 kb on + strand, within ABIE40_RS00775 at 162.402 kb on - strand, within ABIE40_RS00775 at 162.418 kb on - strand, within ABIE40_RS00775
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 160,203 + -0.3 160,203 + -2.8 160,203 + +0.6 160,203 + +1.0 160,203 + +1.5 160,204 - +1.6 160,204 - +0.3 160,204 - +1.6 160,204 - +0.6 160,210 - +0.0 160,289 + ABIE40_RS00755 0.19 +1.4 160,289 + ABIE40_RS00755 0.19 -0.0 160,289 + ABIE40_RS00755 0.19 -0.7 160,289 + ABIE40_RS00755 0.19 +0.4 160,289 + ABIE40_RS00755 0.19 +1.7 160,289 + ABIE40_RS00755 0.19 -1.1 160,290 - ABIE40_RS00755 0.19 +0.0 160,290 - ABIE40_RS00755 0.19 -0.2 160,290 - ABIE40_RS00755 0.19 +1.6 160,290 - ABIE40_RS00755 0.19 +1.9 160,290 - ABIE40_RS00755 0.19 +0.8 160,468 + ABIE40_RS00755 0.55 -0.7 160,468 + ABIE40_RS00755 0.55 -1.9 160,469 - ABIE40_RS00755 0.55 +0.4 160,469 - ABIE40_RS00755 0.55 +1.6 160,474 - ABIE40_RS00755 0.56 +2.8 160,474 - ABIE40_RS00755 0.56 -1.5 160,522 + ABIE40_RS00755 0.65 +0.8 160,522 + ABIE40_RS00755 0.65 -2.3 160,523 - ABIE40_RS00755 0.65 -1.0 160,542 - ABIE40_RS00755 0.69 -1.8 160,542 - ABIE40_RS00755 0.69 +0.2 160,554 + ABIE40_RS00755 0.72 -1.4 160,554 + ABIE40_RS00755 0.72 -0.3 160,554 + ABIE40_RS00755 0.72 +2.2 160,555 - ABIE40_RS00755 0.72 -0.6 160,555 - ABIE40_RS00755 0.72 +0.5 160,555 - ABIE40_RS00755 0.72 -2.4 160,607 + ABIE40_RS00755 0.82 -0.5 160,607 + ABIE40_RS00755 0.82 -0.5 160,626 - ABIE40_RS00755 0.86 +1.1 160,626 - ABIE40_RS00755 0.86 -1.4 160,679 - +0.0 160,686 + +0.4 160,700 + -0.2 160,700 + +0.8 160,700 + +0.9 160,700 + +1.1 160,701 - -0.5 160,701 - -0.5 160,719 + -0.5 160,719 + +0.5 160,719 + -1.4 160,720 - +0.8 160,720 - +0.2 160,720 - -0.6 160,720 - -0.2 160,738 - +0.4 160,796 - -1.2 160,796 - -1.4 160,796 - -1.5 160,813 - +0.7 160,863 + -2.6 160,864 - -1.0 160,864 - -0.9 160,864 - +0.6 160,864 - +0.0 160,864 - -0.9 160,864 - +0.4 160,864 - -0.3 160,873 - +1.4 160,898 - +0.2 160,915 - +0.1 160,934 + +0.9 160,934 + -0.0 160,934 + -1.2 160,934 + -0.3 160,935 - -0.2 160,935 - -0.2 160,935 - +0.6 160,935 - -0.2 160,935 - -0.9 160,935 - -0.5 161,036 + -0.5 161,218 - +0.8 161,220 - +2.2 161,295 - ABIE40_RS00760 0.37 -0.7 161,301 - ABIE40_RS00760 0.39 -2.2 161,320 - ABIE40_RS00760 0.47 -3.0 161,363 + ABIE40_RS00760 0.64 +1.8 161,363 + ABIE40_RS00760 0.64 -1.5 161,364 - ABIE40_RS00760 0.65 -0.0 161,364 - ABIE40_RS00760 0.65 -0.3 161,429 - +1.1 161,429 - +1.1 161,467 + +0.6 161,468 - +1.2 161,478 + ABIE40_RS00765 0.11 +1.0 161,478 + ABIE40_RS00765 0.11 -1.6 161,513 - ABIE40_RS00765 0.23 -0.2 161,528 + ABIE40_RS00765 0.28 -0.6 161,529 - ABIE40_RS00765 0.28 -0.9 161,536 + ABIE40_RS00765 0.31 +1.4 161,537 - ABIE40_RS00765 0.31 -0.2 161,537 - ABIE40_RS00765 0.31 -2.3 161,652 + ABIE40_RS00765 0.72 -0.4 161,652 + ABIE40_RS00765 0.72 +0.5 161,653 - ABIE40_RS00765 0.72 -1.1 161,662 + ABIE40_RS00765 0.75 +0.5 161,662 + ABIE40_RS00765 0.75 -0.3 161,662 + ABIE40_RS00765 0.75 +0.2 161,663 - ABIE40_RS00765 0.75 -0.9 161,663 - ABIE40_RS00765 0.75 +0.4 161,717 + -0.3 161,717 + -0.5 161,731 - +1.2 161,731 - +1.5 161,731 - +0.3 161,781 + -0.8 161,797 - -3.3 161,892 + +0.4 161,892 + -0.5 161,892 + +0.2 161,893 - -0.4 161,893 - +0.5 161,904 + -3.3 162,105 - +0.1 162,150 + -0.1 162,150 + +0.4 162,150 + +1.6 162,150 + -1.8 162,150 + +0.0 162,150 + +0.3 162,151 - +0.2 162,151 - -3.9 162,151 - +0.5 162,151 - +0.0 162,151 - +0.6 162,151 - -2.4 162,151 - +0.2 162,221 + +1.1 162,221 + +0.5 162,245 + +0.0 162,396 + ABIE40_RS00775 0.55 -2.6 162,396 + ABIE40_RS00775 0.55 -1.0 162,397 - ABIE40_RS00775 0.55 -0.5 162,397 - ABIE40_RS00775 0.55 -3.0 162,397 - ABIE40_RS00775 0.55 +0.0 162,397 - ABIE40_RS00775 0.55 +0.8 162,399 + ABIE40_RS00775 0.56 +0.1 162,399 + ABIE40_RS00775 0.56 -0.3 162,399 + ABIE40_RS00775 0.56 -0.3 162,399 + ABIE40_RS00775 0.56 -0.2 162,399 + ABIE40_RS00775 0.56 +0.8 162,399 + ABIE40_RS00775 0.56 +0.8 162,399 + ABIE40_RS00775 0.56 +0.5 162,400 - ABIE40_RS00775 0.56 -1.5 162,400 - ABIE40_RS00775 0.56 +4.1 162,400 - ABIE40_RS00775 0.56 -0.2 162,400 - ABIE40_RS00775 0.56 -1.3 162,400 - ABIE40_RS00775 0.56 +0.0 162,400 - ABIE40_RS00775 0.56 +1.7 162,400 - ABIE40_RS00775 0.56 +0.1 162,401 + ABIE40_RS00775 0.56 +0.1 162,401 + ABIE40_RS00775 0.56 +0.4 162,401 + ABIE40_RS00775 0.56 -0.0 162,402 - ABIE40_RS00775 0.57 +0.7 162,418 - ABIE40_RS00775 0.62 -1.1
Or see this region's nucleotide sequence