Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS28530 and ABID97_RS28535 are separated by 144 nucleotides ABID97_RS28535 and ABID97_RS28540 are separated by 49 nucleotides ABID97_RS28540 and ABID97_RS28545 are separated by 32 nucleotides ABID97_RS28545 and ABID97_RS28550 are separated by 72 nucleotides
ABID97_RS28530: ABID97_RS28530 - VOC family protein, at 627,332 to 627,596
_RS28530
ABID97_RS28535: ABID97_RS28535 - serine hydrolase, at 627,741 to 628,844
_RS28535
ABID97_RS28540: ABID97_RS28540 - hypothetical protein, at 628,894 to 629,172
_RS28540
ABID97_RS28545: ABID97_RS28545 - hypothetical protein, at 629,205 to 629,606
_RS28545
ABID97_RS28550: ABID97_RS28550 - VOC family protein, at 629,679 to 630,083
_RS28550
Position (kb) 627
628
629 Strain fitness (log2 ratio) -2
-1
0
1 at 626.847 kb on + strand at 626.950 kb on + strand at 626.951 kb on - strand at 626.951 kb on - strand at 626.951 kb on - strand at 626.968 kb on + strand at 626.969 kb on - strand at 627.010 kb on - strand at 627.010 kb on - strand at 627.163 kb on + strand at 627.163 kb on + strand at 627.164 kb on - strand at 627.164 kb on - strand at 627.349 kb on + strand at 627.413 kb on - strand, within ABID97_RS28530 at 627.427 kb on + strand, within ABID97_RS28530 at 627.428 kb on - strand, within ABID97_RS28530 at 627.447 kb on - strand, within ABID97_RS28530 at 627.447 kb on - strand, within ABID97_RS28530 at 627.489 kb on - strand, within ABID97_RS28530 at 627.579 kb on + strand at 627.599 kb on + strand at 627.600 kb on - strand at 627.600 kb on - strand at 627.922 kb on + strand, within ABID97_RS28535 at 627.922 kb on + strand, within ABID97_RS28535 at 627.922 kb on + strand, within ABID97_RS28535 at 627.973 kb on + strand, within ABID97_RS28535 at 628.111 kb on + strand, within ABID97_RS28535 at 628.112 kb on - strand, within ABID97_RS28535 at 628.144 kb on + strand, within ABID97_RS28535 at 628.144 kb on + strand, within ABID97_RS28535 at 628.145 kb on - strand, within ABID97_RS28535 at 628.258 kb on + strand, within ABID97_RS28535 at 628.258 kb on + strand, within ABID97_RS28535 at 628.259 kb on - strand, within ABID97_RS28535 at 628.259 kb on - strand, within ABID97_RS28535 at 628.322 kb on - strand, within ABID97_RS28535 at 628.330 kb on + strand, within ABID97_RS28535 at 628.330 kb on + strand, within ABID97_RS28535 at 628.531 kb on + strand, within ABID97_RS28535 at 628.531 kb on + strand, within ABID97_RS28535 at 628.541 kb on - strand, within ABID97_RS28535 at 628.662 kb on + strand, within ABID97_RS28535 at 628.662 kb on + strand, within ABID97_RS28535 at 628.663 kb on - strand, within ABID97_RS28535 at 628.663 kb on - strand, within ABID97_RS28535 at 628.666 kb on + strand, within ABID97_RS28535 at 628.900 kb on - strand at 629.024 kb on + strand, within ABID97_RS28540 at 629.054 kb on - strand, within ABID97_RS28540 at 629.195 kb on + strand at 629.195 kb on + strand at 629.195 kb on + strand at 629.278 kb on + strand, within ABID97_RS28545 at 629.279 kb on - strand, within ABID97_RS28545 at 629.602 kb on + strand at 629.603 kb on - strand at 629.603 kb on - strand at 629.603 kb on - strand at 629.746 kb on + strand, within ABID97_RS28550 at 629.747 kb on - strand, within ABID97_RS28550 at 629.755 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.758 kb on + strand, within ABID97_RS28550 at 629.759 kb on - strand, within ABID97_RS28550
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 626,847 + -1.1 626,950 + +1.5 626,951 - +0.1 626,951 - +0.0 626,951 - -0.2 626,968 + -0.2 626,969 - +0.4 627,010 - -0.2 627,010 - -0.5 627,163 + +0.6 627,163 + -0.1 627,164 - +0.1 627,164 - -0.2 627,349 + +0.3 627,413 - ABID97_RS28530 0.31 +0.1 627,427 + ABID97_RS28530 0.36 +0.5 627,428 - ABID97_RS28530 0.36 -0.0 627,447 - ABID97_RS28530 0.43 +0.1 627,447 - ABID97_RS28530 0.43 +0.0 627,489 - ABID97_RS28530 0.59 +0.1 627,579 + -0.2 627,599 + -0.3 627,600 - -0.2 627,600 - -0.1 627,922 + ABID97_RS28535 0.16 +0.5 627,922 + ABID97_RS28535 0.16 -0.8 627,922 + ABID97_RS28535 0.16 +0.1 627,973 + ABID97_RS28535 0.21 +0.5 628,111 + ABID97_RS28535 0.34 -0.7 628,112 - ABID97_RS28535 0.34 -0.0 628,144 + ABID97_RS28535 0.37 -0.0 628,144 + ABID97_RS28535 0.37 -0.2 628,145 - ABID97_RS28535 0.37 -0.3 628,258 + ABID97_RS28535 0.47 -0.1 628,258 + ABID97_RS28535 0.47 +0.1 628,259 - ABID97_RS28535 0.47 -0.1 628,259 - ABID97_RS28535 0.47 -1.1 628,322 - ABID97_RS28535 0.53 -0.8 628,330 + ABID97_RS28535 0.53 +1.1 628,330 + ABID97_RS28535 0.53 +0.1 628,531 + ABID97_RS28535 0.72 -1.7 628,531 + ABID97_RS28535 0.72 -2.6 628,541 - ABID97_RS28535 0.72 +0.3 628,662 + ABID97_RS28535 0.83 +0.0 628,662 + ABID97_RS28535 0.83 +0.2 628,663 - ABID97_RS28535 0.84 +0.1 628,663 - ABID97_RS28535 0.84 -0.1 628,666 + ABID97_RS28535 0.84 -0.2 628,900 - -0.4 629,024 + ABID97_RS28540 0.47 -0.4 629,054 - ABID97_RS28540 0.57 +0.0 629,195 + -0.0 629,195 + -1.3 629,195 + +0.2 629,278 + ABID97_RS28545 0.18 +0.4 629,279 - ABID97_RS28545 0.18 +1.3 629,602 + +0.7 629,603 - +0.1 629,603 - -0.7 629,603 - +0.1 629,746 + ABID97_RS28550 0.17 +0.3 629,747 - ABID97_RS28550 0.17 +0.0 629,755 + ABID97_RS28550 0.19 -0.2 629,758 + ABID97_RS28550 0.20 -0.7 629,758 + ABID97_RS28550 0.20 -0.1 629,758 + ABID97_RS28550 0.20 -0.6 629,759 - ABID97_RS28550 0.20 -0.5
Or see this region's nucleotide sequence