Strain Fitness in Variovorax sp. OAS795 around ABID97_RS27885

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS27875 and ABID97_RS27880 are separated by 7 nucleotidesABID97_RS27880 and ABID97_RS27885 are separated by 158 nucleotidesABID97_RS27885 and ABID97_RS27890 are separated by 30 nucleotides ABID97_RS27875: ABID97_RS27875 - nitronate monooxygenase family protein, at 496,124 to 497,110 _RS27875 ABID97_RS27880: ABID97_RS27880 - SDR family oxidoreductase, at 497,118 to 497,858 _RS27880 ABID97_RS27885: ABID97_RS27885 - 2-hydroxychromene-2-carboxylate isomerase, at 498,017 to 498,607 _RS27885 ABID97_RS27890: ABID97_RS27890 - AMP-binding protein, at 498,638 to 500,302 _RS27890 Position (kb) 498 499Strain fitness (log2 ratio) -1 0 1 2 3at 497.046 kb on + strandat 497.189 kb on - strandat 497.974 kb on + strandat 498.065 kb on + strandat 499.063 kb on + strand, within ABID97_RS27890at 499.064 kb on - strand, within ABID97_RS27890at 499.064 kb on - strand, within ABID97_RS27890at 499.398 kb on - strand, within ABID97_RS27890

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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497,046 + +0.1
497,189 - +2.0
497,974 + +3.1
498,065 + -0.2
499,063 + ABID97_RS27890 0.26 +0.0
499,064 - ABID97_RS27890 0.26 -0.6
499,064 - ABID97_RS27890 0.26 +0.4
499,398 - ABID97_RS27890 0.46 -1.0

Or see this region's nucleotide sequence