Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16170 and ABID97_RS16175 are separated by 103 nucleotides ABID97_RS16175 and ABID97_RS16180 are separated by 7 nucleotides ABID97_RS16180 and ABID97_RS16185 are separated by 25 nucleotides ABID97_RS16185 and ABID97_RS16190 are separated by 4 nucleotides
ABID97_RS16170: ABID97_RS16170 - phosphoketolase family protein, at 3,346,659 to 3,349,016
_RS16170
ABID97_RS16175: ABID97_RS16175 - response regulator transcription factor, at 3,349,120 to 3,349,860
_RS16175
ABID97_RS16180: ABID97_RS16180 - PAS domain S-box protein, at 3,349,868 to 3,351,961
_RS16180
ABID97_RS16185: ABID97_RS16185 - sulfite exporter TauE/SafE family protein, at 3,351,987 to 3,352,691
_RS16185
ABID97_RS16190: ABID97_RS16190 - oxygen-independent coproporphyrinogen III oxidase, at 3,352,696 to 3,354,117
_RS16190
Position (kb) 3349
3350
3351
3352 Strain fitness (log2 ratio) -1
0
1 at 3348.893 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3348.957 kb on + strand at 3349.187 kb on - strand at 3349.187 kb on - strand at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.420 kb on + strand, within ABID97_RS16175 at 3349.421 kb on - strand, within ABID97_RS16175 at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand at 3349.828 kb on + strand at 3350.327 kb on + strand, within ABID97_RS16180 at 3350.327 kb on + strand, within ABID97_RS16180 at 3350.328 kb on - strand, within ABID97_RS16180 at 3350.624 kb on + strand, within ABID97_RS16180 at 3350.624 kb on + strand, within ABID97_RS16180 at 3350.625 kb on - strand, within ABID97_RS16180 at 3350.625 kb on - strand, within ABID97_RS16180 at 3352.234 kb on + strand, within ABID97_RS16185 at 3352.235 kb on - strand, within ABID97_RS16185 at 3352.235 kb on - strand, within ABID97_RS16185 at 3352.504 kb on + strand, within ABID97_RS16185 at 3352.504 kb on + strand, within ABID97_RS16185 at 3352.504 kb on + strand, within ABID97_RS16185 at 3352.505 kb on - strand, within ABID97_RS16185
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 3,348,893 + -0.1 3,348,957 + -0.4 3,348,957 + +0.0 3,348,957 + -0.0 3,349,187 - -0.2 3,349,187 - -0.4 3,349,420 + ABID97_RS16175 0.40 -1.3 3,349,420 + ABID97_RS16175 0.40 -1.1 3,349,421 - ABID97_RS16175 0.41 +0.7 3,349,828 + +0.5 3,349,828 + +0.0 3,349,828 + -0.1 3,349,828 + +0.4 3,350,327 + ABID97_RS16180 0.22 -0.4 3,350,327 + ABID97_RS16180 0.22 +0.0 3,350,328 - ABID97_RS16180 0.22 +0.2 3,350,624 + ABID97_RS16180 0.36 -0.4 3,350,624 + ABID97_RS16180 0.36 +0.5 3,350,625 - ABID97_RS16180 0.36 +0.3 3,350,625 - ABID97_RS16180 0.36 -0.5 3,352,234 + ABID97_RS16185 0.35 +0.6 3,352,235 - ABID97_RS16185 0.35 +0.0 3,352,235 - ABID97_RS16185 0.35 +0.8 3,352,504 + ABID97_RS16185 0.73 +0.5 3,352,504 + ABID97_RS16185 0.73 +0.3 3,352,504 + ABID97_RS16185 0.73 +0.1 3,352,505 - ABID97_RS16185 0.73 +0.4
Or see this region's nucleotide sequence