Experiment: L-Proline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS10080 and ABID97_RS10085 are separated by 108 nucleotides ABID97_RS10085 and ABID97_RS10090 are separated by 24 nucleotides
ABID97_RS10080: ABID97_RS10080 - LysR family transcriptional regulator, at 2,093,561 to 2,094,505
_RS10080
ABID97_RS10085: ABID97_RS10085 - M20 family metallopeptidase, at 2,094,614 to 2,096,032
_RS10085
ABID97_RS10090: ABID97_RS10090 - tripartite tricarboxylate transporter substrate binding protein, at 2,096,057 to 2,097,049
_RS10090
Position (kb)
2094
2095
2096
2097 Strain fitness (log2 ratio)
-1
0
1 at 2093.767 kb on + strand, within ABID97_RS10080 at 2093.768 kb on - strand, within ABID97_RS10080 at 2094.054 kb on + strand, within ABID97_RS10080 at 2094.054 kb on + strand, within ABID97_RS10080 at 2094.055 kb on - strand, within ABID97_RS10080 at 2094.055 kb on - strand, within ABID97_RS10080 at 2094.055 kb on - strand, within ABID97_RS10080 at 2094.055 kb on - strand, within ABID97_RS10080 at 2094.535 kb on + strand at 2094.580 kb on - strand at 2094.650 kb on + strand at 2094.884 kb on + strand, within ABID97_RS10085 at 2094.975 kb on - strand, within ABID97_RS10085 at 2095.067 kb on + strand, within ABID97_RS10085 at 2096.367 kb on - strand, within ABID97_RS10090 at 2096.403 kb on - strand, within ABID97_RS10090 at 2096.832 kb on - strand, within ABID97_RS10090
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (C) remove 2,093,767 + ABID97_RS10080 0.22 +0.3 2,093,768 - ABID97_RS10080 0.22 +0.1 2,094,054 + ABID97_RS10080 0.52 +0.7 2,094,054 + ABID97_RS10080 0.52 -0.0 2,094,055 - ABID97_RS10080 0.52 +0.1 2,094,055 - ABID97_RS10080 0.52 -0.3 2,094,055 - ABID97_RS10080 0.52 -0.2 2,094,055 - ABID97_RS10080 0.52 -0.3 2,094,535 + +0.6 2,094,580 - -0.6 2,094,650 + +0.8 2,094,884 + ABID97_RS10085 0.19 -1.4 2,094,975 - ABID97_RS10085 0.25 -1.5 2,095,067 + ABID97_RS10085 0.32 -0.1 2,096,367 - ABID97_RS10090 0.31 +1.5 2,096,403 - ABID97_RS10090 0.35 +1.3 2,096,832 - ABID97_RS10090 0.78 +0.6
Or see this region's nucleotide sequence