Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydiA and aroH are separated by 156 nucleotides aroH and ydiE are separated by 131 nucleotides ydiE and ydiU are separated by 3 nucleotides
b1703: ydiA - hypothetical protein (NCBI), at 1,785,469 to 1,786,302
ydiA
b1704: aroH - 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible (NCBI), at 1,786,459 to 1,787,505
aroH
b1705: ydiE - hypothetical protein (NCBI), at 1,787,637 to 1,787,828
ydiE
b1706: ydiU - hypothetical protein (NCBI), at 1,787,832 to 1,789,268
ydiU
Position (kb)
1786
1787
1788 Strain fitness (log2 ratio)
-2
-1
0
1 at 1785.739 kb on + strand, within ydiA at 1785.765 kb on + strand, within ydiA at 1785.814 kb on - strand, within ydiA at 1785.826 kb on - strand, within ydiA at 1785.827 kb on - strand, within ydiA at 1785.827 kb on - strand, within ydiA at 1785.918 kb on + strand, within ydiA at 1785.918 kb on + strand, within ydiA at 1786.154 kb on + strand, within ydiA at 1786.164 kb on + strand, within ydiA at 1786.192 kb on + strand, within ydiA at 1786.224 kb on + strand at 1786.412 kb on + strand at 1786.464 kb on - strand at 1786.530 kb on - strand at 1786.532 kb on + strand at 1786.532 kb on + strand at 1786.543 kb on - strand at 1786.543 kb on - strand at 1786.553 kb on - strand at 1786.553 kb on - strand at 1786.632 kb on + strand, within aroH at 1786.668 kb on - strand, within aroH at 1786.668 kb on - strand, within aroH at 1786.722 kb on + strand, within aroH at 1786.897 kb on - strand, within aroH at 1787.055 kb on - strand, within aroH at 1787.210 kb on - strand, within aroH at 1787.217 kb on - strand, within aroH at 1787.434 kb on - strand at 1788.003 kb on + strand, within ydiU at 1788.003 kb on + strand, within ydiU at 1788.058 kb on - strand, within ydiU at 1788.058 kb on - strand, within ydiU at 1788.158 kb on - strand, within ydiU at 1788.163 kb on - strand, within ydiU at 1788.163 kb on - strand, within ydiU
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,785,739 + ydiA b1703 0.32 -0.6 1,785,765 + ydiA b1703 0.35 -2.2 1,785,814 - ydiA b1703 0.41 -1.0 1,785,826 - ydiA b1703 0.43 +0.6 1,785,827 - ydiA b1703 0.43 -0.7 1,785,827 - ydiA b1703 0.43 -0.9 1,785,918 + ydiA b1703 0.54 -0.1 1,785,918 + ydiA b1703 0.54 +0.6 1,786,154 + ydiA b1703 0.82 +0.3 1,786,164 + ydiA b1703 0.83 -0.2 1,786,192 + ydiA b1703 0.87 -0.5 1,786,224 + -0.8 1,786,412 + -0.9 1,786,464 - +0.6 1,786,530 - +0.1 1,786,532 + -0.7 1,786,532 + -0.9 1,786,543 - -0.6 1,786,543 - -1.1 1,786,553 - +1.1 1,786,553 - -0.3 1,786,632 + aroH b1704 0.17 -0.5 1,786,668 - aroH b1704 0.20 +0.0 1,786,668 - aroH b1704 0.20 -0.9 1,786,722 + aroH b1704 0.25 -0.5 1,786,897 - aroH b1704 0.42 -0.3 1,787,055 - aroH b1704 0.57 -0.5 1,787,210 - aroH b1704 0.72 +0.5 1,787,217 - aroH b1704 0.72 -0.9 1,787,434 - -1.6 1,788,003 + ydiU b1706 0.12 +0.6 1,788,003 + ydiU b1706 0.12 -1.1 1,788,058 - ydiU b1706 0.16 +0.8 1,788,058 - ydiU b1706 0.16 +0.8 1,788,158 - ydiU b1706 0.23 -0.2 1,788,163 - ydiU b1706 0.23 -0.3 1,788,163 - ydiU b1706 0.23 -0.9
Or see this region's nucleotide sequence