Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybjH and b0844 are separated by 85 nucleotides b0844 and ybjJ overlap by 1 nucleotides ybjJ and ybjK are separated by 83 nucleotides ybjK and rybB are separated by 16 nucleotides rybB and ybjL are separated by 79 nucleotides
b0843: ybjH - hypothetical protein (NCBI), at 884,169 to 884,453
ybjH
b0844: b0844 - orf, hypothetical protein (VIMSS), at 884,539 to 885,354
b0844
b0845: ybjJ - predicted transporter (NCBI), at 885,354 to 886,562
ybjJ
b0846: ybjK - predicted DNA-binding transcriptional regulator (NCBI), at 886,646 to 887,182
ybjK
b4417: rybB - unknown RNA (NCBI), at 887,199 to 887,277
rybB
b0847: ybjL - hypothetical protein (NCBI), at 887,357 to 889,042
ybjL
Position (kb) 885
886
887 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 884.355 kb on + strand, within ybjH at 884.355 kb on + strand, within ybjH at 884.502 kb on + strand at 884.523 kb on - strand at 884.553 kb on - strand at 884.594 kb on + strand at 884.613 kb on - strand at 884.613 kb on - strand at 884.674 kb on + strand, within b0844 at 884.692 kb on + strand, within b0844 at 884.713 kb on + strand, within b0844 at 884.789 kb on - strand, within b0844 at 884.807 kb on + strand, within b0844 at 884.815 kb on - strand, within b0844 at 884.833 kb on + strand, within b0844 at 884.835 kb on + strand, within b0844 at 884.956 kb on - strand, within b0844 at 884.956 kb on - strand, within b0844 at 885.073 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.095 kb on + strand, within b0844 at 885.105 kb on - strand, within b0844 at 885.133 kb on + strand, within b0844 at 885.226 kb on + strand, within b0844 at 885.231 kb on + strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.245 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.268 kb on - strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.272 kb on + strand, within b0844 at 885.280 kb on - strand at 885.280 kb on - strand at 885.296 kb on - strand at 885.320 kb on - strand at 885.350 kb on - strand at 885.471 kb on - strand at 885.494 kb on - strand, within ybjJ at 885.533 kb on + strand, within ybjJ at 885.533 kb on + strand, within ybjJ at 885.551 kb on - strand, within ybjJ at 885.626 kb on - strand, within ybjJ at 885.628 kb on + strand, within ybjJ at 885.674 kb on + strand, within ybjJ at 885.674 kb on + strand, within ybjJ at 885.689 kb on - strand, within ybjJ at 885.693 kb on + strand, within ybjJ at 885.706 kb on + strand, within ybjJ at 885.743 kb on + strand, within ybjJ at 885.909 kb on - strand, within ybjJ at 885.951 kb on + strand, within ybjJ at 886.005 kb on - strand, within ybjJ at 886.291 kb on + strand, within ybjJ at 886.291 kb on + strand, within ybjJ at 886.313 kb on + strand, within ybjJ at 886.363 kb on + strand, within ybjJ at 886.395 kb on - strand, within ybjJ at 886.430 kb on + strand, within ybjJ at 886.457 kb on + strand at 886.522 kb on - strand at 886.522 kb on - strand at 886.814 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.815 kb on - strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.822 kb on + strand, within ybjK at 886.840 kb on + strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.887 kb on - strand, within ybjK at 886.926 kb on - strand, within ybjK at 886.977 kb on - strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.034 kb on + strand, within ybjK at 887.169 kb on - strand at 887.169 kb on - strand at 887.170 kb on - strand at 887.286 kb on - strand at 887.292 kb on + strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.399 kb on - strand at 887.418 kb on - strand at 887.441 kb on + strand at 887.442 kb on - strand at 887.449 kb on - strand at 887.449 kb on - strand at 887.515 kb on + strand at 887.554 kb on + strand, within ybjL
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 884,355 + ybjH b0843 0.65 +1.7 884,355 + ybjH b0843 0.65 +1.4 884,502 + +0.7 884,523 - -1.1 884,553 - -1.2 884,594 + -0.6 884,613 - +0.5 884,613 - +1.6 884,674 + b0844 b0844 0.17 +0.1 884,692 + b0844 b0844 0.19 -0.5 884,713 + b0844 b0844 0.21 -0.5 884,789 - b0844 b0844 0.31 -0.7 884,807 + b0844 b0844 0.33 +0.2 884,815 - b0844 b0844 0.34 +0.2 884,833 + b0844 b0844 0.36 -0.2 884,835 + b0844 b0844 0.36 +0.1 884,956 - b0844 b0844 0.51 +0.4 884,956 - b0844 b0844 0.51 +0.2 885,073 + b0844 b0844 0.65 -0.3 885,095 + b0844 b0844 0.68 -0.5 885,095 + b0844 b0844 0.68 +0.1 885,095 + b0844 b0844 0.68 +0.3 885,105 - b0844 b0844 0.69 +0.3 885,133 + b0844 b0844 0.73 -0.8 885,226 + b0844 b0844 0.84 +0.2 885,231 + b0844 b0844 0.85 -0.3 885,245 - b0844 b0844 0.87 +0.1 885,245 - b0844 b0844 0.87 -0.8 885,245 - b0844 b0844 0.87 +0.2 885,268 - b0844 b0844 0.89 -0.1 885,268 - b0844 b0844 0.89 -1.5 885,272 + b0844 b0844 0.90 -1.0 885,272 + b0844 b0844 0.90 +0.2 885,272 + b0844 b0844 0.90 -0.8 885,280 - -0.4 885,280 - +0.1 885,296 - +0.1 885,320 - +0.2 885,350 - +1.6 885,471 - +0.2 885,494 - ybjJ b0845 0.12 -0.4 885,533 + ybjJ b0845 0.15 +0.9 885,533 + ybjJ b0845 0.15 +0.1 885,551 - ybjJ b0845 0.16 +0.2 885,626 - ybjJ b0845 0.22 +0.6 885,628 + ybjJ b0845 0.23 +0.3 885,674 + ybjJ b0845 0.26 +1.3 885,674 + ybjJ b0845 0.26 +0.2 885,689 - ybjJ b0845 0.28 +0.8 885,693 + ybjJ b0845 0.28 +0.6 885,706 + ybjJ b0845 0.29 +0.4 885,743 + ybjJ b0845 0.32 +0.0 885,909 - ybjJ b0845 0.46 +0.6 885,951 + ybjJ b0845 0.49 +0.5 886,005 - ybjJ b0845 0.54 +0.5 886,291 + ybjJ b0845 0.78 -0.2 886,291 + ybjJ b0845 0.78 +1.3 886,313 + ybjJ b0845 0.79 -0.7 886,363 + ybjJ b0845 0.83 -0.7 886,395 - ybjJ b0845 0.86 +0.3 886,430 + ybjJ b0845 0.89 +1.3 886,457 + -0.6 886,522 - -0.5 886,522 - -0.5 886,814 - ybjK b0846 0.31 -0.7 886,815 - ybjK b0846 0.31 -1.3 886,815 - ybjK b0846 0.31 -2.0 886,822 + ybjK b0846 0.33 -0.3 886,822 + ybjK b0846 0.33 -0.7 886,840 + ybjK b0846 0.36 -1.2 886,887 - ybjK b0846 0.45 -3.4 886,887 - ybjK b0846 0.45 -0.7 886,926 - ybjK b0846 0.52 -3.3 886,977 - ybjK b0846 0.62 +0.0 887,034 + ybjK b0846 0.72 -1.6 887,034 + ybjK b0846 0.72 -0.3 887,034 + ybjK b0846 0.72 -0.7 887,169 - +0.0 887,169 - -1.1 887,170 - -0.9 887,286 - +0.2 887,292 + +0.3 887,399 - -0.2 887,399 - -1.6 887,399 - +0.5 887,418 - +0.2 887,441 + +0.0 887,442 - +0.0 887,449 - +0.4 887,449 - +0.2 887,515 + +0.1 887,554 + ybjL b0847 0.12 -0.2
Or see this region's nucleotide sequence