Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS16055 and RPSI07_RS16060 are separated by 111 nucleotides RPSI07_RS16060 and RPSI07_RS16065 are separated by 271 nucleotides RPSI07_RS16065 and RPSI07_RS16070 are separated by 38 nucleotides RPSI07_RS16070 and RPSI07_RS16075 are separated by 180 nucleotides
RPSI07_RS16055: RPSI07_RS16055 - carboxymuconolactone decarboxylase family protein, at 1,758,955 to 1,759,482
_RS16055
RPSI07_RS16060: RPSI07_RS16060 - peroxiredoxin, at 1,759,594 to 1,760,142
_RS16060
RPSI07_RS16065: RPSI07_RS16065 - two-component sensor histidine kinase, at 1,760,414 to 1,761,775
_RS16065
RPSI07_RS16070: RPSI07_RS16070 - two-component system response regulator OmpR, at 1,761,814 to 1,762,536
_RS16070
RPSI07_RS16075: RPSI07_RS16075 - hypothetical protein, at 1,762,717 to 1,763,166
_RS16075
Position (kb) 1760
1761
1762 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1759.442 kb on + strand at 1759.443 kb on - strand at 1759.443 kb on - strand at 1759.662 kb on + strand, within RPSI07_RS16060 at 1759.663 kb on - strand, within RPSI07_RS16060 at 1759.811 kb on + strand, within RPSI07_RS16060 at 1760.003 kb on + strand, within RPSI07_RS16060 at 1760.004 kb on - strand, within RPSI07_RS16060 at 1760.004 kb on - strand, within RPSI07_RS16060 at 1760.428 kb on - strand at 1760.505 kb on - strand at 1760.594 kb on + strand, within RPSI07_RS16065 at 1760.594 kb on + strand, within RPSI07_RS16065 at 1760.595 kb on - strand, within RPSI07_RS16065 at 1760.595 kb on - strand, within RPSI07_RS16065 at 1760.898 kb on + strand, within RPSI07_RS16065 at 1760.899 kb on - strand, within RPSI07_RS16065 at 1761.327 kb on + strand, within RPSI07_RS16065 at 1761.371 kb on - strand, within RPSI07_RS16065 at 1761.471 kb on + strand, within RPSI07_RS16065 at 1761.471 kb on + strand, within RPSI07_RS16065 at 1761.495 kb on + strand, within RPSI07_RS16065 at 1761.562 kb on - strand, within RPSI07_RS16065 at 1761.728 kb on + strand at 1761.815 kb on + strand at 1761.842 kb on + strand at 1761.842 kb on + strand at 1761.842 kb on + strand at 1761.950 kb on + strand, within RPSI07_RS16070 at 1761.950 kb on + strand, within RPSI07_RS16070 at 1761.950 kb on + strand, within RPSI07_RS16070 at 1761.951 kb on - strand, within RPSI07_RS16070 at 1762.229 kb on + strand, within RPSI07_RS16070 at 1762.466 kb on + strand at 1762.467 kb on - strand at 1762.549 kb on - strand at 1762.578 kb on + strand at 1762.608 kb on + strand at 1762.608 kb on + strand at 1762.648 kb on + strand at 1762.648 kb on + strand at 1762.648 kb on + strand at 1762.648 kb on + strand at 1762.648 kb on + strand at 1762.648 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 1,759,442 + -0.1 1,759,443 - -1.6 1,759,443 - -0.2 1,759,662 + RPSI07_RS16060 0.12 +3.6 1,759,663 - RPSI07_RS16060 0.13 -0.7 1,759,811 + RPSI07_RS16060 0.40 -1.4 1,760,003 + RPSI07_RS16060 0.74 -0.1 1,760,004 - RPSI07_RS16060 0.75 +0.1 1,760,004 - RPSI07_RS16060 0.75 -0.1 1,760,428 - -1.6 1,760,505 - +2.3 1,760,594 + RPSI07_RS16065 0.13 -1.9 1,760,594 + RPSI07_RS16065 0.13 +1.2 1,760,595 - RPSI07_RS16065 0.13 -0.8 1,760,595 - RPSI07_RS16065 0.13 +0.7 1,760,898 + RPSI07_RS16065 0.36 -0.2 1,760,899 - RPSI07_RS16065 0.36 -2.8 1,761,327 + RPSI07_RS16065 0.67 -0.1 1,761,371 - RPSI07_RS16065 0.70 +1.0 1,761,471 + RPSI07_RS16065 0.78 +1.3 1,761,471 + RPSI07_RS16065 0.78 -0.9 1,761,495 + RPSI07_RS16065 0.79 -0.5 1,761,562 - RPSI07_RS16065 0.84 -1.4 1,761,728 + -0.6 1,761,815 + -0.8 1,761,842 + +1.7 1,761,842 + +1.7 1,761,842 + +1.3 1,761,950 + RPSI07_RS16070 0.19 +0.4 1,761,950 + RPSI07_RS16070 0.19 -1.6 1,761,950 + RPSI07_RS16070 0.19 +2.2 1,761,951 - RPSI07_RS16070 0.19 +1.0 1,762,229 + RPSI07_RS16070 0.57 +0.8 1,762,466 + -1.0 1,762,467 - -2.4 1,762,549 - -0.7 1,762,578 + -0.9 1,762,608 + -1.3 1,762,608 + +2.1 1,762,648 + -0.9 1,762,648 + +0.3 1,762,648 + -1.3 1,762,648 + -0.8 1,762,648 + -1.6 1,762,648 + +0.4
Or see this region's nucleotide sequence