Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS04810

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS04805 and RPSI07_RS04810 are separated by 4 nucleotidesRPSI07_RS04810 and RPSI07_RS04815 are separated by 2 nucleotides RPSI07_RS04805: RPSI07_RS04805 - TolC family protein, at 1,302,674 to 1,304,077 _RS04805 RPSI07_RS04810: RPSI07_RS04810 - efflux RND transporter periplasmic adaptor subunit, at 1,304,082 to 1,305,248 _RS04810 RPSI07_RS04815: RPSI07_RS04815 - CusA/CzcA family heavy metal efflux RND transporter, at 1,305,251 to 1,308,346 _RS04815 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1303.178 kb on + strand, within RPSI07_RS04805at 1303.179 kb on - strand, within RPSI07_RS04805at 1303.191 kb on - strand, within RPSI07_RS04805at 1303.211 kb on + strand, within RPSI07_RS04805at 1303.211 kb on + strand, within RPSI07_RS04805at 1303.211 kb on + strand, within RPSI07_RS04805at 1303.211 kb on + strand, within RPSI07_RS04805at 1303.211 kb on + strand, within RPSI07_RS04805at 1303.212 kb on - strand, within RPSI07_RS04805at 1303.212 kb on - strand, within RPSI07_RS04805at 1303.212 kb on - strand, within RPSI07_RS04805at 1303.212 kb on - strand, within RPSI07_RS04805at 1303.212 kb on - strand, within RPSI07_RS04805at 1303.213 kb on - strand, within RPSI07_RS04805at 1303.214 kb on + strand, within RPSI07_RS04805at 1303.214 kb on + strand, within RPSI07_RS04805at 1303.214 kb on + strand, within RPSI07_RS04805at 1303.215 kb on - strand, within RPSI07_RS04805at 1303.215 kb on - strand, within RPSI07_RS04805at 1303.215 kb on - strand, within RPSI07_RS04805at 1303.215 kb on - strand, within RPSI07_RS04805at 1303.326 kb on - strand, within RPSI07_RS04805at 1303.397 kb on + strand, within RPSI07_RS04805at 1303.608 kb on - strand, within RPSI07_RS04805at 1303.608 kb on - strand, within RPSI07_RS04805at 1303.608 kb on - strand, within RPSI07_RS04805at 1303.608 kb on - strand, within RPSI07_RS04805at 1303.679 kb on + strand, within RPSI07_RS04805at 1303.679 kb on + strand, within RPSI07_RS04805at 1303.680 kb on - strand, within RPSI07_RS04805at 1303.680 kb on - strand, within RPSI07_RS04805at 1303.680 kb on - strand, within RPSI07_RS04805at 1303.680 kb on - strand, within RPSI07_RS04805at 1303.791 kb on + strand, within RPSI07_RS04805at 1303.827 kb on - strand, within RPSI07_RS04805at 1303.827 kb on - strand, within RPSI07_RS04805at 1303.827 kb on - strand, within RPSI07_RS04805at 1303.923 kb on - strand, within RPSI07_RS04805at 1304.076 kb on - strandat 1304.367 kb on + strand, within RPSI07_RS04810at 1304.478 kb on + strand, within RPSI07_RS04810at 1304.490 kb on + strand, within RPSI07_RS04810at 1304.490 kb on + strand, within RPSI07_RS04810at 1304.490 kb on + strand, within RPSI07_RS04810at 1304.490 kb on + strand, within RPSI07_RS04810at 1304.490 kb on + strand, within RPSI07_RS04810at 1304.491 kb on - strand, within RPSI07_RS04810at 1304.491 kb on - strand, within RPSI07_RS04810at 1304.491 kb on - strand, within RPSI07_RS04810at 1304.491 kb on - strand, within RPSI07_RS04810at 1304.491 kb on - strand, within RPSI07_RS04810at 1304.511 kb on + strand, within RPSI07_RS04810at 1304.511 kb on + strand, within RPSI07_RS04810at 1304.511 kb on + strand, within RPSI07_RS04810at 1304.511 kb on + strand, within RPSI07_RS04810at 1304.512 kb on - strand, within RPSI07_RS04810at 1304.808 kb on + strand, within RPSI07_RS04810at 1304.808 kb on + strand, within RPSI07_RS04810at 1304.808 kb on + strand, within RPSI07_RS04810at 1304.808 kb on + strand, within RPSI07_RS04810at 1304.808 kb on + strand, within RPSI07_RS04810at 1304.809 kb on - strand, within RPSI07_RS04810at 1304.809 kb on - strand, within RPSI07_RS04810at 1304.819 kb on + strand, within RPSI07_RS04810at 1304.991 kb on + strand, within RPSI07_RS04810at 1304.991 kb on + strand, within RPSI07_RS04810at 1304.991 kb on + strand, within RPSI07_RS04810at 1304.991 kb on + strand, within RPSI07_RS04810at 1304.991 kb on + strand, within RPSI07_RS04810at 1304.992 kb on - strand, within RPSI07_RS04810at 1304.992 kb on - strand, within RPSI07_RS04810at 1304.992 kb on - strand, within RPSI07_RS04810at 1304.992 kb on - strand, within RPSI07_RS04810at 1304.992 kb on - strand, within RPSI07_RS04810at 1305.072 kb on + strand, within RPSI07_RS04810at 1305.075 kb on + strand, within RPSI07_RS04810at 1305.075 kb on + strand, within RPSI07_RS04810at 1305.076 kb on - strand, within RPSI07_RS04810at 1305.076 kb on - strand, within RPSI07_RS04810at 1305.076 kb on - strand, within RPSI07_RS04810at 1305.076 kb on - strand, within RPSI07_RS04810at 1305.076 kb on - strand, within RPSI07_RS04810at 1305.366 kb on - strandat 1305.587 kb on + strand, within RPSI07_RS04815at 1305.588 kb on - strand, within RPSI07_RS04815at 1305.588 kb on - strand, within RPSI07_RS04815at 1305.713 kb on + strand, within RPSI07_RS04815at 1305.714 kb on - strand, within RPSI07_RS04815at 1305.723 kb on - strand, within RPSI07_RS04815at 1305.723 kb on - strand, within RPSI07_RS04815at 1305.723 kb on - strand, within RPSI07_RS04815at 1305.797 kb on + strand, within RPSI07_RS04815at 1305.797 kb on + strand, within RPSI07_RS04815at 1305.797 kb on + strand, within RPSI07_RS04815at 1305.797 kb on + strand, within RPSI07_RS04815at 1305.798 kb on - strand, within RPSI07_RS04815at 1305.798 kb on - strand, within RPSI07_RS04815at 1305.832 kb on + strand, within RPSI07_RS04815at 1305.833 kb on + strand, within RPSI07_RS04815at 1305.834 kb on - strand, within RPSI07_RS04815at 1305.834 kb on - strand, within RPSI07_RS04815at 1306.067 kb on + strand, within RPSI07_RS04815at 1306.067 kb on + strand, within RPSI07_RS04815at 1306.067 kb on + strand, within RPSI07_RS04815at 1306.067 kb on + strand, within RPSI07_RS04815at 1306.068 kb on - strand, within RPSI07_RS04815at 1306.211 kb on + strandat 1306.211 kb on + strand, within RPSI07_RS04815

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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1,303,178 + RPSI07_RS04805 0.36 +1.1
1,303,179 - RPSI07_RS04805 0.36 -0.1
1,303,191 - RPSI07_RS04805 0.37 -0.8
1,303,211 + RPSI07_RS04805 0.38 +0.5
1,303,211 + RPSI07_RS04805 0.38 +1.1
1,303,211 + RPSI07_RS04805 0.38 +1.6
1,303,211 + RPSI07_RS04805 0.38 +0.7
1,303,211 + RPSI07_RS04805 0.38 +6.3
1,303,212 - RPSI07_RS04805 0.38 -0.9
1,303,212 - RPSI07_RS04805 0.38 +3.3
1,303,212 - RPSI07_RS04805 0.38 -0.7
1,303,212 - RPSI07_RS04805 0.38 -1.7
1,303,212 - RPSI07_RS04805 0.38 -0.1
1,303,213 - RPSI07_RS04805 0.38 -0.7
1,303,214 + RPSI07_RS04805 0.38 +2.1
1,303,214 + RPSI07_RS04805 0.38 -2.9
1,303,214 + RPSI07_RS04805 0.38 +0.0
1,303,215 - RPSI07_RS04805 0.39 +0.3
1,303,215 - RPSI07_RS04805 0.39 +0.9
1,303,215 - RPSI07_RS04805 0.39 -1.0
1,303,215 - RPSI07_RS04805 0.39 -1.8
1,303,326 - RPSI07_RS04805 0.46 +0.3
1,303,397 + RPSI07_RS04805 0.51 -0.6
1,303,608 - RPSI07_RS04805 0.67 +0.5
1,303,608 - RPSI07_RS04805 0.67 -0.4
1,303,608 - RPSI07_RS04805 0.67 -1.7
1,303,608 - RPSI07_RS04805 0.67 +1.3
1,303,679 + RPSI07_RS04805 0.72 +0.1
1,303,679 + RPSI07_RS04805 0.72 -0.2
1,303,680 - RPSI07_RS04805 0.72 +0.4
1,303,680 - RPSI07_RS04805 0.72 -2.0
1,303,680 - RPSI07_RS04805 0.72 -0.1
1,303,680 - RPSI07_RS04805 0.72 +0.9
1,303,791 + RPSI07_RS04805 0.80 +1.8
1,303,827 - RPSI07_RS04805 0.82 +0.3
1,303,827 - RPSI07_RS04805 0.82 -0.8
1,303,827 - RPSI07_RS04805 0.82 -2.8
1,303,923 - RPSI07_RS04805 0.89 +2.6
1,304,076 - -1.0
1,304,367 + RPSI07_RS04810 0.24 -0.4
1,304,478 + RPSI07_RS04810 0.34 +1.6
1,304,490 + RPSI07_RS04810 0.35 -2.1
1,304,490 + RPSI07_RS04810 0.35 +0.5
1,304,490 + RPSI07_RS04810 0.35 -0.2
1,304,490 + RPSI07_RS04810 0.35 +0.9
1,304,490 + RPSI07_RS04810 0.35 -1.5
1,304,491 - RPSI07_RS04810 0.35 -1.5
1,304,491 - RPSI07_RS04810 0.35 -1.7
1,304,491 - RPSI07_RS04810 0.35 -1.5
1,304,491 - RPSI07_RS04810 0.35 +1.5
1,304,491 - RPSI07_RS04810 0.35 +0.9
1,304,511 + RPSI07_RS04810 0.37 -1.3
1,304,511 + RPSI07_RS04810 0.37 -0.3
1,304,511 + RPSI07_RS04810 0.37 -1.7
1,304,511 + RPSI07_RS04810 0.37 +1.2
1,304,512 - RPSI07_RS04810 0.37 -1.9
1,304,808 + RPSI07_RS04810 0.62 +1.6
1,304,808 + RPSI07_RS04810 0.62 -2.8
1,304,808 + RPSI07_RS04810 0.62 +2.6
1,304,808 + RPSI07_RS04810 0.62 +0.3
1,304,808 + RPSI07_RS04810 0.62 -2.0
1,304,809 - RPSI07_RS04810 0.62 -2.2
1,304,809 - RPSI07_RS04810 0.62 +0.7
1,304,819 + RPSI07_RS04810 0.63 -1.8
1,304,991 + RPSI07_RS04810 0.78 -0.3
1,304,991 + RPSI07_RS04810 0.78 -0.2
1,304,991 + RPSI07_RS04810 0.78 -1.0
1,304,991 + RPSI07_RS04810 0.78 +1.3
1,304,991 + RPSI07_RS04810 0.78 -2.6
1,304,992 - RPSI07_RS04810 0.78 -0.2
1,304,992 - RPSI07_RS04810 0.78 -0.5
1,304,992 - RPSI07_RS04810 0.78 +0.7
1,304,992 - RPSI07_RS04810 0.78 +0.3
1,304,992 - RPSI07_RS04810 0.78 -1.2
1,305,072 + RPSI07_RS04810 0.85 -0.8
1,305,075 + RPSI07_RS04810 0.85 +1.8
1,305,075 + RPSI07_RS04810 0.85 -1.6
1,305,076 - RPSI07_RS04810 0.85 -2.1
1,305,076 - RPSI07_RS04810 0.85 +1.1
1,305,076 - RPSI07_RS04810 0.85 +0.5
1,305,076 - RPSI07_RS04810 0.85 +2.5
1,305,076 - RPSI07_RS04810 0.85 -0.9
1,305,366 - -0.5
1,305,587 + RPSI07_RS04815 0.11 -2.3
1,305,588 - RPSI07_RS04815 0.11 -1.5
1,305,588 - RPSI07_RS04815 0.11 -0.7
1,305,713 + RPSI07_RS04815 0.15 -0.4
1,305,714 - RPSI07_RS04815 0.15 -0.7
1,305,723 - RPSI07_RS04815 0.15 +0.5
1,305,723 - RPSI07_RS04815 0.15 -1.1
1,305,723 - RPSI07_RS04815 0.15 -0.7
1,305,797 + RPSI07_RS04815 0.18 +0.3
1,305,797 + RPSI07_RS04815 0.18 +1.4
1,305,797 + RPSI07_RS04815 0.18 +3.1
1,305,797 + RPSI07_RS04815 0.18 -0.9
1,305,798 - RPSI07_RS04815 0.18 -0.3
1,305,798 - RPSI07_RS04815 0.18 -0.2
1,305,832 + RPSI07_RS04815 0.19 +0.5
1,305,833 + RPSI07_RS04815 0.19 +1.4
1,305,834 - RPSI07_RS04815 0.19 +0.3
1,305,834 - RPSI07_RS04815 0.19 +2.9
1,306,067 + RPSI07_RS04815 0.26 +1.0
1,306,067 + RPSI07_RS04815 0.26 +3.3
1,306,067 + RPSI07_RS04815 0.26 +0.1
1,306,067 + RPSI07_RS04815 0.26 -1.1
1,306,068 - RPSI07_RS04815 0.26 -0.7
1,306,211 + +1.3
1,306,211 + RPSI07_RS04815 0.31 +0.1

Or see this region's nucleotide sequence