Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01340

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS01330 and RPSI07_RS01335 are separated by 114 nucleotidesRPSI07_RS01335 and RPSI07_RS01340 overlap by 1 nucleotidesRPSI07_RS01340 and RPSI07_RS01345 are separated by 366 nucleotidesRPSI07_RS01345 and RPSI07_RS01350 are separated by 68 nucleotides RPSI07_RS01330: RPSI07_RS01330 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 366,407 to 368,656 _RS01330 RPSI07_RS01335: RPSI07_RS01335 - organic hydroperoxide resistance protein, at 368,771 to 369,205 _RS01335 RPSI07_RS01340: RPSI07_RS01340 - nucleotidyltransferase family protein, at 369,205 to 369,864 _RS01340 RPSI07_RS01345: RPSI07_RS01345 - hypothetical protein, at 370,231 to 370,434 _RS01345 RPSI07_RS01350: RPSI07_RS01350 - GGDEF domain-containing protein, at 370,503 to 373,190 _RS01350 Position (kb) 369 370Strain fitness (log2 ratio) -2 -1 0 1 2 3at 368.249 kb on + strand, within RPSI07_RS01330at 368.250 kb on + strand, within RPSI07_RS01330at 368.250 kb on + strand, within RPSI07_RS01330at 368.250 kb on + strand, within RPSI07_RS01330at 368.250 kb on + strand, within RPSI07_RS01330at 368.251 kb on - strand, within RPSI07_RS01330at 368.251 kb on - strand, within RPSI07_RS01330at 368.251 kb on - strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.279 kb on + strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.280 kb on - strand, within RPSI07_RS01330at 368.654 kb on + strandat 368.789 kb on + strandat 368.789 kb on + strandat 368.789 kb on + strandat 368.789 kb on + strandat 368.789 kb on + strandat 368.790 kb on - strandat 368.790 kb on - strandat 368.830 kb on + strand, within RPSI07_RS01335at 368.831 kb on - strand, within RPSI07_RS01335at 368.831 kb on - strand, within RPSI07_RS01335at 369.664 kb on + strand, within RPSI07_RS01340at 369.664 kb on + strand, within RPSI07_RS01340at 369.665 kb on - strand, within RPSI07_RS01340at 369.665 kb on - strand, within RPSI07_RS01340at 369.733 kb on - strand, within RPSI07_RS01340at 369.759 kb on + strand, within RPSI07_RS01340at 369.759 kb on + strand, within RPSI07_RS01340at 369.759 kb on + strand, within RPSI07_RS01340at 369.790 kb on - strand, within RPSI07_RS01340at 369.889 kb on + strandat 369.890 kb on - strandat 369.890 kb on - strandat 370.026 kb on + strandat 370.027 kb on - strandat 370.113 kb on + strandat 370.113 kb on + strandat 370.114 kb on - strandat 370.114 kb on - strandat 370.114 kb on - strandat 370.141 kb on + strandat 370.141 kb on + strandat 370.141 kb on + strandat 370.142 kb on - strandat 370.142 kb on - strandat 370.151 kb on + strandat 370.165 kb on - strandat 370.195 kb on + strandat 370.734 kb on - strandat 370.754 kb on + strandat 370.754 kb on + strandat 370.755 kb on - strandat 370.755 kb on - strandat 370.755 kb on - strandat 370.780 kb on + strand, within RPSI07_RS01350at 370.780 kb on + strand, within RPSI07_RS01350at 370.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
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368,249 + RPSI07_RS01330 0.82 -0.1
368,250 + RPSI07_RS01330 0.82 +0.2
368,250 + RPSI07_RS01330 0.82 +0.6
368,250 + RPSI07_RS01330 0.82 -1.1
368,250 + RPSI07_RS01330 0.82 -1.1
368,251 - RPSI07_RS01330 0.82 +1.8
368,251 - RPSI07_RS01330 0.82 -1.7
368,251 - RPSI07_RS01330 0.82 +0.1
368,279 + RPSI07_RS01330 0.83 -2.3
368,279 + RPSI07_RS01330 0.83 -0.1
368,279 + RPSI07_RS01330 0.83 -1.7
368,279 + RPSI07_RS01330 0.83 -1.8
368,279 + RPSI07_RS01330 0.83 +1.8
368,279 + RPSI07_RS01330 0.83 -1.6
368,279 + RPSI07_RS01330 0.83 +0.2
368,279 + RPSI07_RS01330 0.83 +0.1
368,280 - RPSI07_RS01330 0.83 -1.7
368,280 - RPSI07_RS01330 0.83 +0.8
368,280 - RPSI07_RS01330 0.83 -2.0
368,280 - RPSI07_RS01330 0.83 -0.6
368,280 - RPSI07_RS01330 0.83 -1.2
368,280 - RPSI07_RS01330 0.83 -1.1
368,654 + -0.4
368,789 + -1.8
368,789 + -1.8
368,789 + -1.4
368,789 + +0.7
368,789 + -2.6
368,790 - -2.0
368,790 - -1.1
368,830 + RPSI07_RS01335 0.14 -2.1
368,831 - RPSI07_RS01335 0.14 +3.0
368,831 - RPSI07_RS01335 0.14 +1.0
369,664 + RPSI07_RS01340 0.70 -1.7
369,664 + RPSI07_RS01340 0.70 -1.2
369,665 - RPSI07_RS01340 0.70 -0.5
369,665 - RPSI07_RS01340 0.70 -2.7
369,733 - RPSI07_RS01340 0.80 +0.7
369,759 + RPSI07_RS01340 0.84 +1.8
369,759 + RPSI07_RS01340 0.84 +0.2
369,759 + RPSI07_RS01340 0.84 -0.8
369,790 - RPSI07_RS01340 0.89 -0.9
369,889 + -0.1
369,890 - +0.1
369,890 - -1.0
370,026 + -0.6
370,027 - +0.2
370,113 + -0.4
370,113 + -2.6
370,114 - +0.2
370,114 - -0.8
370,114 - -1.0
370,141 + +0.4
370,141 + +0.7
370,141 + -2.6
370,142 - +1.6
370,142 - +1.4
370,151 + -0.1
370,165 - -1.3
370,195 + +1.4
370,734 - +1.2
370,754 + -1.4
370,754 + -0.4
370,755 - -1.1
370,755 - -2.4
370,755 - +0.6
370,780 + RPSI07_RS01350 0.10 -0.0
370,780 + RPSI07_RS01350 0.10 +2.4
370,781 - +1.0

Or see this region's nucleotide sequence