Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS00050 and RPSI07_RS00055 are separated by 171 nucleotides RPSI07_RS00055 and RPSI07_RS00060 are separated by 130 nucleotides RPSI07_RS00060 and RPSI07_RS00065 are separated by 485 nucleotides
RPSI07_RS00050: RPSI07_RS00050 - YhfC family intramembrane metalloprotease, at 11,817 to 12,614
_RS00050
RPSI07_RS00055: RPSI07_RS00055 - hypothetical protein, at 12,786 to 13,217
_RS00055
RPSI07_RS00060: RPSI07_RS00060 - PAS domain S-box protein, at 13,348 to 16,035
_RS00060
RPSI07_RS00065: RPSI07_RS00065 - leu/ile/val-binding periplasmic (pbp) ABC transporter protein, at 16,521 to 17,681
_RS00065
Position (kb) 13
14
15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 12.370 kb on + strand, within RPSI07_RS00050 at 12.370 kb on + strand, within RPSI07_RS00050 at 12.370 kb on + strand, within RPSI07_RS00050 at 12.370 kb on + strand, within RPSI07_RS00050 at 12.371 kb on - strand, within RPSI07_RS00050 at 12.371 kb on - strand, within RPSI07_RS00050 at 12.434 kb on - strand, within RPSI07_RS00050 at 12.434 kb on - strand, within RPSI07_RS00050 at 12.434 kb on - strand, within RPSI07_RS00050 at 12.647 kb on - strand at 12.647 kb on - strand at 12.647 kb on - strand at 12.647 kb on - strand at 12.731 kb on + strand at 12.731 kb on + strand at 12.731 kb on + strand at 12.732 kb on - strand at 12.732 kb on - strand at 12.736 kb on + strand at 12.736 kb on + strand at 12.737 kb on - strand at 12.737 kb on - strand at 12.738 kb on + strand at 12.738 kb on + strand at 12.738 kb on + strand at 12.738 kb on + strand at 12.738 kb on + strand at 12.739 kb on - strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.782 kb on + strand at 12.783 kb on - strand at 12.783 kb on - strand at 12.783 kb on - strand at 12.783 kb on - strand at 12.783 kb on - strand at 12.891 kb on + strand, within RPSI07_RS00055 at 12.891 kb on + strand, within RPSI07_RS00055 at 12.891 kb on + strand, within RPSI07_RS00055 at 12.892 kb on - strand, within RPSI07_RS00055 at 13.093 kb on - strand, within RPSI07_RS00055 at 13.093 kb on - strand at 13.093 kb on - strand, within RPSI07_RS00055 at 13.093 kb on - strand, within RPSI07_RS00055 at 13.197 kb on + strand at 13.198 kb on - strand at 13.198 kb on - strand at 13.198 kb on - strand at 13.198 kb on - strand at 13.198 kb on - strand at 13.198 kb on - strand at 13.215 kb on + strand at 13.340 kb on + strand at 13.341 kb on - strand at 13.531 kb on + strand at 13.531 kb on + strand at 13.532 kb on - strand at 13.532 kb on - strand at 13.532 kb on - strand at 13.609 kb on + strand at 13.610 kb on - strand at 13.610 kb on - strand at 13.610 kb on - strand at 13.879 kb on + strand, within RPSI07_RS00060 at 13.879 kb on + strand, within RPSI07_RS00060 at 13.879 kb on + strand, within RPSI07_RS00060 at 13.880 kb on - strand, within RPSI07_RS00060 at 13.880 kb on - strand, within RPSI07_RS00060 at 13.945 kb on + strand, within RPSI07_RS00060 at 13.945 kb on + strand, within RPSI07_RS00060 at 14.475 kb on + strand, within RPSI07_RS00060 at 14.475 kb on + strand, within RPSI07_RS00060 at 14.475 kb on + strand, within RPSI07_RS00060 at 14.476 kb on - strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.845 kb on + strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.846 kb on - strand, within RPSI07_RS00060 at 14.847 kb on + strand, within RPSI07_RS00060 at 14.847 kb on + strand, within RPSI07_RS00060 at 14.847 kb on + strand, within RPSI07_RS00060 at 14.848 kb on - strand, within RPSI07_RS00060 at 14.848 kb on - strand, within RPSI07_RS00060 at 14.848 kb on - strand, within RPSI07_RS00060 at 14.849 kb on - strand, within RPSI07_RS00060 at 14.924 kb on - strand, within RPSI07_RS00060 at 15.085 kb on + strand, within RPSI07_RS00060 at 15.085 kb on + strand, within RPSI07_RS00060 at 15.086 kb on - strand, within RPSI07_RS00060 at 15.086 kb on - strand, within RPSI07_RS00060 at 15.086 kb on - strand, within RPSI07_RS00060 at 15.242 kb on - strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.421 kb on + strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.422 kb on - strand, within RPSI07_RS00060 at 15.423 kb on + strand, within RPSI07_RS00060 at 15.423 kb on + strand, within RPSI07_RS00060 at 15.423 kb on + strand, within RPSI07_RS00060 at 15.423 kb on + strand, within RPSI07_RS00060 at 15.423 kb on + strand, within RPSI07_RS00060 at 15.424 kb on - strand, within RPSI07_RS00060 at 15.424 kb on - strand, within RPSI07_RS00060 at 15.666 kb on + strand, within RPSI07_RS00060 at 15.666 kb on + strand, within RPSI07_RS00060 at 15.666 kb on + strand, within RPSI07_RS00060 at 15.822 kb on + strand at 15.822 kb on + strand at 15.958 kb on + strand at 15.958 kb on + strand at 15.958 kb on + strand at 15.958 kb on + strand at 15.959 kb on - strand at 15.959 kb on - strand at 15.959 kb on - strand at 16.287 kb on + strand at 16.288 kb on - strand at 16.288 kb on - strand at 16.503 kb on + strand at 16.654 kb on - strand, within RPSI07_RS00065 at 16.938 kb on + strand, within RPSI07_RS00065 at 16.939 kb on - strand, within RPSI07_RS00065 at 16.939 kb on - strand, within RPSI07_RS00065 at 16.939 kb on - strand, within RPSI07_RS00065 at 16.939 kb on - strand, within RPSI07_RS00065 at 17.034 kb on + strand, within RPSI07_RS00065 at 17.034 kb on + strand, within RPSI07_RS00065 at 17.034 kb on + strand, within RPSI07_RS00065 at 17.035 kb on - strand, within RPSI07_RS00065 at 17.035 kb on - strand, within RPSI07_RS00065 at 17.035 kb on - strand, within RPSI07_RS00065
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted remove 12,370 + RPSI07_RS00050 0.69 -0.9 12,370 + RPSI07_RS00050 0.69 -0.3 12,370 + RPSI07_RS00050 0.69 -0.5 12,370 + RPSI07_RS00050 0.69 -0.3 12,371 - RPSI07_RS00050 0.69 +1.7 12,371 - RPSI07_RS00050 0.69 -0.3 12,434 - RPSI07_RS00050 0.77 -0.1 12,434 - RPSI07_RS00050 0.77 -0.8 12,434 - RPSI07_RS00050 0.77 -0.2 12,647 - +2.1 12,647 - -0.1 12,647 - -0.0 12,647 - -1.8 12,731 + +1.1 12,731 + -0.5 12,731 + -1.1 12,732 - -0.1 12,732 - -0.0 12,736 + +0.3 12,736 + +1.9 12,737 - +2.2 12,737 - +0.0 12,738 + -0.8 12,738 + +2.2 12,738 + +0.6 12,738 + +1.4 12,738 + -0.8 12,739 - -2.0 12,782 + +0.4 12,782 + +0.5 12,782 + -0.3 12,782 + +0.3 12,782 + +0.3 12,782 + -1.2 12,782 + -0.9 12,783 - -0.2 12,783 - -0.5 12,783 - -1.4 12,783 - -0.1 12,783 - -0.3 12,891 + RPSI07_RS00055 0.24 +2.0 12,891 + RPSI07_RS00055 0.24 -0.7 12,891 + RPSI07_RS00055 0.24 +0.2 12,892 - RPSI07_RS00055 0.25 -1.2 13,093 - RPSI07_RS00055 0.71 -0.7 13,093 - +3.8 13,093 - RPSI07_RS00055 0.71 -0.3 13,093 - RPSI07_RS00055 0.71 +0.7 13,197 + +0.3 13,198 - +0.2 13,198 - +0.5 13,198 - -0.6 13,198 - +1.0 13,198 - -0.8 13,198 - +3.6 13,215 + -0.8 13,340 + -1.1 13,341 - +0.1 13,531 + +0.0 13,531 + -0.2 13,532 - +1.1 13,532 - +2.0 13,532 - -0.8 13,609 + -1.0 13,610 - +0.2 13,610 - -1.8 13,610 - +1.4 13,879 + RPSI07_RS00060 0.20 -0.8 13,879 + RPSI07_RS00060 0.20 -2.6 13,879 + RPSI07_RS00060 0.20 -0.1 13,880 - RPSI07_RS00060 0.20 +1.8 13,880 - RPSI07_RS00060 0.20 -1.8 13,945 + RPSI07_RS00060 0.22 +0.9 13,945 + RPSI07_RS00060 0.22 -1.2 14,475 + RPSI07_RS00060 0.42 -1.6 14,475 + RPSI07_RS00060 0.42 -1.4 14,475 + RPSI07_RS00060 0.42 +0.4 14,476 - RPSI07_RS00060 0.42 +1.0 14,845 + RPSI07_RS00060 0.56 -1.3 14,845 + RPSI07_RS00060 0.56 -2.1 14,845 + RPSI07_RS00060 0.56 -0.7 14,845 + RPSI07_RS00060 0.56 +1.2 14,845 + RPSI07_RS00060 0.56 -0.3 14,845 + RPSI07_RS00060 0.56 +2.8 14,845 + RPSI07_RS00060 0.56 -1.1 14,846 - RPSI07_RS00060 0.56 -2.4 14,846 - RPSI07_RS00060 0.56 -1.6 14,846 - RPSI07_RS00060 0.56 -0.4 14,846 - RPSI07_RS00060 0.56 -0.3 14,846 - RPSI07_RS00060 0.56 +0.1 14,846 - RPSI07_RS00060 0.56 -0.9 14,846 - RPSI07_RS00060 0.56 +2.0 14,846 - RPSI07_RS00060 0.56 +0.8 14,846 - RPSI07_RS00060 0.56 -2.7 14,846 - RPSI07_RS00060 0.56 +0.8 14,846 - RPSI07_RS00060 0.56 -0.4 14,847 + RPSI07_RS00060 0.56 -0.7 14,847 + RPSI07_RS00060 0.56 +1.0 14,847 + RPSI07_RS00060 0.56 +1.2 14,848 - RPSI07_RS00060 0.56 -1.6 14,848 - RPSI07_RS00060 0.56 +1.4 14,848 - RPSI07_RS00060 0.56 -0.1 14,849 - RPSI07_RS00060 0.56 +0.9 14,924 - RPSI07_RS00060 0.59 +0.9 15,085 + RPSI07_RS00060 0.65 +1.3 15,085 + RPSI07_RS00060 0.65 +2.0 15,086 - RPSI07_RS00060 0.65 -1.7 15,086 - RPSI07_RS00060 0.65 -2.3 15,086 - RPSI07_RS00060 0.65 -0.8 15,242 - RPSI07_RS00060 0.70 -0.2 15,421 + RPSI07_RS00060 0.77 -1.6 15,421 + RPSI07_RS00060 0.77 +0.1 15,421 + RPSI07_RS00060 0.77 -1.4 15,421 + RPSI07_RS00060 0.77 -0.2 15,421 + RPSI07_RS00060 0.77 -0.7 15,421 + RPSI07_RS00060 0.77 +3.0 15,421 + RPSI07_RS00060 0.77 -0.5 15,421 + RPSI07_RS00060 0.77 +0.1 15,421 + RPSI07_RS00060 0.77 +1.2 15,422 - RPSI07_RS00060 0.77 -0.0 15,422 - RPSI07_RS00060 0.77 -0.1 15,422 - RPSI07_RS00060 0.77 -0.5 15,422 - RPSI07_RS00060 0.77 -2.9 15,422 - RPSI07_RS00060 0.77 -1.0 15,422 - RPSI07_RS00060 0.77 +0.5 15,422 - RPSI07_RS00060 0.77 -1.5 15,423 + RPSI07_RS00060 0.77 +0.3 15,423 + RPSI07_RS00060 0.77 -0.6 15,423 + RPSI07_RS00060 0.77 +2.3 15,423 + RPSI07_RS00060 0.77 +0.7 15,423 + RPSI07_RS00060 0.77 +0.2 15,424 - RPSI07_RS00060 0.77 -0.3 15,424 - RPSI07_RS00060 0.77 -1.3 15,666 + RPSI07_RS00060 0.86 +1.0 15,666 + RPSI07_RS00060 0.86 -2.2 15,666 + RPSI07_RS00060 0.86 -3.1 15,822 + -0.4 15,822 + -2.3 15,958 + +1.5 15,958 + -0.4 15,958 + +0.0 15,958 + -1.4 15,959 - -2.6 15,959 - -1.5 15,959 - +2.8 16,287 + -1.9 16,288 - -1.6 16,288 - +0.4 16,503 + -0.6 16,654 - RPSI07_RS00065 0.11 -1.9 16,938 + RPSI07_RS00065 0.36 +1.7 16,939 - RPSI07_RS00065 0.36 +0.9 16,939 - RPSI07_RS00065 0.36 +0.5 16,939 - RPSI07_RS00065 0.36 -1.7 16,939 - RPSI07_RS00065 0.36 -0.4 17,034 + RPSI07_RS00065 0.44 -0.3 17,034 + RPSI07_RS00065 0.44 -1.0 17,034 + RPSI07_RS00065 0.44 -0.1 17,035 - RPSI07_RS00065 0.44 -1.6 17,035 - RPSI07_RS00065 0.44 +0.8 17,035 - RPSI07_RS00065 0.44 -1.2
Or see this region's nucleotide sequence