Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2818

Experiment: Cobalt chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2816 and PfGW456L13_2817 overlap by 4 nucleotidesPfGW456L13_2817 and PfGW456L13_2818 overlap by 4 nucleotidesPfGW456L13_2818 and PfGW456L13_2819 are separated by 165 nucleotidesPfGW456L13_2819 and PfGW456L13_2820 overlap by 1 nucleotides PfGW456L13_2816 - Various polyols ABC transporter, ATP-binding component, at 3,122,089 to 3,122,937 _2816 PfGW456L13_2817 - HEAT repeat-containing protein, at 3,122,934 to 3,123,896 _2817 PfGW456L13_2818 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 3,123,893 to 3,124,171 _2818 PfGW456L13_2819 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 3,124,337 to 3,124,954 _2819 PfGW456L13_2820 - RecA/RadA recombinase, at 3,124,954 to 3,125,571 _2820 Position (kb) 3123 3124 3125Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3122.953 kb on + strandat 3122.953 kb on + strandat 3123.014 kb on - strandat 3123.014 kb on - strandat 3123.227 kb on + strand, within PfGW456L13_2817at 3123.227 kb on + strand, within PfGW456L13_2817at 3123.296 kb on - strand, within PfGW456L13_2817at 3123.296 kb on - strand, within PfGW456L13_2817at 3123.815 kb on - strandat 3124.092 kb on - strand, within PfGW456L13_2818at 3124.136 kb on + strand, within PfGW456L13_2818at 3124.136 kb on + strand, within PfGW456L13_2818at 3124.148 kb on + strandat 3124.148 kb on + strandat 3124.148 kb on + strandat 3124.149 kb on - strandat 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strandat 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.688 kb on + strand, within PfGW456L13_2819at 3124.689 kb on - strand, within PfGW456L13_2819at 3124.689 kb on - strand, within PfGW456L13_2819at 3124.689 kb on - strand, within PfGW456L13_2819at 3124.689 kb on - strand, within PfGW456L13_2819at 3124.689 kb on - strand, within PfGW456L13_2819at 3124.877 kb on + strand, within PfGW456L13_2819at 3124.877 kb on + strand, within PfGW456L13_2819

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM
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3,122,953 + -0.2
3,122,953 + -0.7
3,123,014 - -0.3
3,123,014 - -1.2
3,123,227 + PfGW456L13_2817 0.30 -0.6
3,123,227 + PfGW456L13_2817 0.30 +0.6
3,123,296 - PfGW456L13_2817 0.38 +0.4
3,123,296 - PfGW456L13_2817 0.38 -0.9
3,123,815 - -1.2
3,124,092 - PfGW456L13_2818 0.71 +0.7
3,124,136 + PfGW456L13_2818 0.87 +0.7
3,124,136 + PfGW456L13_2818 0.87 +1.8
3,124,148 + +0.8
3,124,148 + +1.1
3,124,148 + -1.3
3,124,149 - +1.2
3,124,688 + PfGW456L13_2819 0.57 -0.3
3,124,688 + PfGW456L13_2819 0.57 -0.5
3,124,688 + PfGW456L13_2819 0.57 -2.8
3,124,688 + PfGW456L13_2819 0.57 -1.0
3,124,688 + PfGW456L13_2819 0.57 +1.4
3,124,688 + PfGW456L13_2819 0.57 -0.2
3,124,688 + +1.2
3,124,688 + PfGW456L13_2819 0.57 -0.6
3,124,688 + PfGW456L13_2819 0.57 -0.2
3,124,688 + PfGW456L13_2819 0.57 +0.4
3,124,688 + PfGW456L13_2819 0.57 -0.8
3,124,689 - PfGW456L13_2819 0.57 +0.5
3,124,689 - PfGW456L13_2819 0.57 -0.4
3,124,689 - PfGW456L13_2819 0.57 -0.4
3,124,689 - PfGW456L13_2819 0.57 -0.5
3,124,689 - PfGW456L13_2819 0.57 -0.4
3,124,877 + PfGW456L13_2819 0.87 -0.5
3,124,877 + PfGW456L13_2819 0.87 +0.1

Or see this region's nucleotide sequence