Experiment: Cobalt chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1464 and PfGW456L13_1465 are separated by 10 nucleotides PfGW456L13_1465 and PfGW456L13_1466 overlap by 4 nucleotides PfGW456L13_1466 and PfGW456L13_1467 are separated by 204 nucleotides PfGW456L13_1467 and PfGW456L13_1468 are separated by 203 nucleotides
PfGW456L13_1464 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 1,619,484 to 1,620,101
_1464
PfGW456L13_1465 - hypothetical protein, at 1,620,112 to 1,620,237
_1465
PfGW456L13_1466 - FIG00953595: hypothetical protein, at 1,620,234 to 1,620,491
_1466
PfGW456L13_1467 - Alkylphosphonate utilization operon protein PhnA, at 1,620,696 to 1,621,037
_1467
PfGW456L13_1468 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,621,241 to 1,622,209
_1468
Position (kb)
1620
1621
1622 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1619.855 kb on + strand, within PfGW456L13_1464 at 1619.862 kb on + strand, within PfGW456L13_1464 at 1619.862 kb on + strand, within PfGW456L13_1464 at 1619.863 kb on - strand, within PfGW456L13_1464 at 1619.863 kb on - strand, within PfGW456L13_1464 at 1619.904 kb on + strand, within PfGW456L13_1464 at 1619.904 kb on + strand, within PfGW456L13_1464 at 1619.904 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.003 kb on + strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.004 kb on - strand, within PfGW456L13_1464 at 1620.025 kb on - strand, within PfGW456L13_1464 at 1620.025 kb on - strand, within PfGW456L13_1464 at 1620.064 kb on + strand at 1620.064 kb on + strand at 1620.064 kb on + strand at 1620.065 kb on - strand at 1620.070 kb on + strand at 1620.099 kb on + strand at 1620.099 kb on + strand at 1620.100 kb on - strand at 1620.100 kb on - strand at 1620.113 kb on + strand at 1620.113 kb on + strand at 1620.113 kb on + strand at 1620.113 kb on + strand at 1620.114 kb on - strand at 1620.114 kb on - strand at 1620.119 kb on + strand at 1620.155 kb on - strand, within PfGW456L13_1465 at 1620.164 kb on + strand, within PfGW456L13_1465 at 1620.213 kb on + strand, within PfGW456L13_1465 at 1620.213 kb on + strand, within PfGW456L13_1465 at 1620.214 kb on - strand, within PfGW456L13_1465 at 1620.214 kb on - strand, within PfGW456L13_1465 at 1620.237 kb on + strand at 1620.306 kb on - strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.449 kb on - strand, within PfGW456L13_1466 at 1620.449 kb on - strand, within PfGW456L13_1466 at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.554 kb on - strand at 1620.554 kb on - strand at 1620.554 kb on - strand at 1620.631 kb on - strand at 1620.631 kb on - strand at 1620.827 kb on + strand, within PfGW456L13_1467 at 1620.827 kb on + strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.997 kb on + strand, within PfGW456L13_1467 at 1620.997 kb on + strand, within PfGW456L13_1467 at 1620.998 kb on - strand, within PfGW456L13_1467 at 1621.039 kb on - strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.080 kb on - strand at 1621.080 kb on - strand at 1621.081 kb on + strand at 1621.082 kb on - strand at 1621.089 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.16 mM remove 1,619,855 + PfGW456L13_1464 0.60 -1.6 1,619,862 + PfGW456L13_1464 0.61 +0.2 1,619,862 + PfGW456L13_1464 0.61 -0.1 1,619,863 - PfGW456L13_1464 0.61 -0.1 1,619,863 - PfGW456L13_1464 0.61 -1.3 1,619,904 + PfGW456L13_1464 0.68 +1.1 1,619,904 + PfGW456L13_1464 0.68 -1.2 1,619,904 + PfGW456L13_1464 0.68 -0.1 1,620,003 + PfGW456L13_1464 0.84 +0.7 1,620,003 + PfGW456L13_1464 0.84 -1.0 1,620,003 + PfGW456L13_1464 0.84 +0.3 1,620,003 + PfGW456L13_1464 0.84 +0.3 1,620,003 + PfGW456L13_1464 0.84 +0.3 1,620,003 + PfGW456L13_1464 0.84 -0.7 1,620,004 - PfGW456L13_1464 0.84 +0.6 1,620,004 - PfGW456L13_1464 0.84 +0.5 1,620,004 - PfGW456L13_1464 0.84 +0.6 1,620,004 - PfGW456L13_1464 0.84 -0.9 1,620,004 - PfGW456L13_1464 0.84 +0.3 1,620,004 - PfGW456L13_1464 0.84 -0.3 1,620,004 - PfGW456L13_1464 0.84 +0.3 1,620,004 - PfGW456L13_1464 0.84 -0.2 1,620,025 - PfGW456L13_1464 0.88 -0.4 1,620,025 - PfGW456L13_1464 0.88 -1.2 1,620,064 + -0.5 1,620,064 + +0.0 1,620,064 + -0.6 1,620,065 - +0.1 1,620,070 + -0.5 1,620,099 + -0.2 1,620,099 + -1.4 1,620,100 - -0.5 1,620,100 - -0.4 1,620,113 + -0.2 1,620,113 + +0.6 1,620,113 + +0.1 1,620,113 + +0.3 1,620,114 - +0.3 1,620,114 - +0.2 1,620,119 + -0.3 1,620,155 - PfGW456L13_1465 0.34 -0.9 1,620,164 + PfGW456L13_1465 0.41 -1.8 1,620,213 + PfGW456L13_1465 0.80 +1.7 1,620,213 + PfGW456L13_1465 0.80 +1.1 1,620,214 - PfGW456L13_1465 0.81 +1.5 1,620,214 - PfGW456L13_1465 0.81 +0.7 1,620,237 + -0.8 1,620,306 - PfGW456L13_1466 0.28 -0.3 1,620,448 + PfGW456L13_1466 0.83 -0.5 1,620,448 + PfGW456L13_1466 0.83 -0.5 1,620,448 + PfGW456L13_1466 0.83 +0.4 1,620,449 - PfGW456L13_1466 0.83 +0.1 1,620,449 - PfGW456L13_1466 0.83 +0.6 1,620,484 + -0.2 1,620,484 + -0.3 1,620,484 + -0.6 1,620,484 + +0.1 1,620,484 + -0.3 1,620,484 + -0.0 1,620,484 + -1.1 1,620,484 + +0.1 1,620,485 - -0.1 1,620,485 - -0.6 1,620,485 - +0.1 1,620,485 - -0.2 1,620,485 - +0.5 1,620,554 - -0.2 1,620,554 - -0.3 1,620,554 - +0.7 1,620,631 - -0.3 1,620,631 - +0.7 1,620,827 + PfGW456L13_1467 0.38 +1.7 1,620,827 + PfGW456L13_1467 0.38 -0.3 1,620,828 - PfGW456L13_1467 0.39 +0.3 1,620,828 - PfGW456L13_1467 0.39 +0.6 1,620,828 - PfGW456L13_1467 0.39 +0.3 1,620,828 - PfGW456L13_1467 0.39 -0.5 1,620,828 - PfGW456L13_1467 0.39 -0.0 1,620,991 + PfGW456L13_1467 0.86 +0.1 1,620,991 + PfGW456L13_1467 0.86 -0.4 1,620,991 + PfGW456L13_1467 0.86 -0.3 1,620,991 + PfGW456L13_1467 0.86 -0.3 1,620,991 + PfGW456L13_1467 0.86 -0.2 1,620,991 + PfGW456L13_1467 0.86 +0.2 1,620,991 + PfGW456L13_1467 0.86 -0.7 1,620,991 + PfGW456L13_1467 0.86 -0.5 1,620,991 + PfGW456L13_1467 0.86 -0.7 1,620,991 + PfGW456L13_1467 0.86 -0.2 1,620,991 + PfGW456L13_1467 0.86 +0.1 1,620,991 + PfGW456L13_1467 0.86 -0.8 1,620,991 + PfGW456L13_1467 0.86 +0.4 1,620,992 - PfGW456L13_1467 0.87 -0.2 1,620,992 - PfGW456L13_1467 0.87 -0.6 1,620,992 - PfGW456L13_1467 0.87 +0.0 1,620,992 - PfGW456L13_1467 0.87 -0.3 1,620,992 - PfGW456L13_1467 0.87 -0.1 1,620,992 - PfGW456L13_1467 0.87 -0.6 1,620,992 - PfGW456L13_1467 0.87 -0.1 1,620,992 - PfGW456L13_1467 0.87 -0.4 1,620,992 - PfGW456L13_1467 0.87 +0.3 1,620,992 - PfGW456L13_1467 0.87 +0.3 1,620,992 - PfGW456L13_1467 0.87 -0.4 1,620,992 - PfGW456L13_1467 0.87 -0.7 1,620,997 + PfGW456L13_1467 0.88 +0.2 1,620,997 + PfGW456L13_1467 0.88 -0.2 1,620,998 - PfGW456L13_1467 0.88 -0.2 1,621,039 - +1.2 1,621,077 + +0.2 1,621,077 + -0.2 1,621,077 + +0.5 1,621,077 + +0.3 1,621,077 + +0.2 1,621,077 + -0.1 1,621,077 + +0.1 1,621,077 + -0.9 1,621,077 + +0.6 1,621,077 + -0.7 1,621,078 - -0.2 1,621,078 - -1.0 1,621,078 - -2.6 1,621,078 - -0.5 1,621,078 - -0.5 1,621,078 - +0.3 1,621,078 - -0.1 1,621,078 - +0.3 1,621,078 - +0.9 1,621,078 - -2.2 1,621,078 - +0.1 1,621,078 - -0.3 1,621,078 - +0.5 1,621,078 - +0.3 1,621,079 + -0.3 1,621,079 + +1.3 1,621,079 + -0.3 1,621,079 + -3.0 1,621,080 - +0.5 1,621,080 - -0.0 1,621,081 + +0.1 1,621,082 - -0.5 1,621,089 + -1.5 1,621,190 + +0.9 1,621,190 + -0.9 1,621,190 + +0.2 1,621,190 + -1.4 1,621,190 + -0.3 1,621,190 + +0.3 1,621,190 + +0.5 1,621,191 - -0.3 1,621,191 - +2.5 1,621,191 - +0.2 1,621,191 - +0.2 1,621,191 - -0.1 1,621,191 - +0.3 1,621,191 - -0.1 1,621,191 - +0.1 1,621,191 - +0.2 1,621,199 - +0.1
Or see this region's nucleotide sequence