Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS28450

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
6,328,061	-				-0.1
6,328,061	-				-0.8
6,328,061	-				+0.8
6,328,061	-				+0.4
6,328,061	-				+0.3
6,328,061	-				+0.8
6,328,092	+				+1.1
6,328,092	+				+1.4
6,328,094	+				+0.2
6,328,094	+				-0.1
6,328,095	-				-0.7
6,328,095	-				+1.0
6,328,095	-				-0.4
6,328,095	-				-0.7
6,328,125	+				-0.0
6,328,125	+				-0.9
6,328,125	+				-0.1
6,328,125	+				+0.8
6,328,125	+				+0.5
6,328,125	+				+0.7
6,328,125	+				+0.5
6,328,125	+				+0.4
6,328,125	+				+1.1
6,328,125	+				+0.8
6,328,126	-				-0.3
6,328,126	-				+2.6
6,328,126	-				+0.3
6,328,262	+		PFLU_RS28445	0.22	+0.4
6,328,263	-		PFLU_RS28445	0.22	+0.1
6,328,263	-		PFLU_RS28445	0.22	-0.3
6,328,277	+		PFLU_RS28445	0.23	+0.1
6,328,277	+		PFLU_RS28445	0.23	-1.7
6,328,277	+		PFLU_RS28445	0.23	-1.9
6,328,277	+		PFLU_RS28445	0.23	-0.6
6,328,277	+		PFLU_RS28445	0.23	+1.5
6,328,277	+		PFLU_RS28445	0.23	+1.0
6,328,277	+		PFLU_RS28445	0.23	-1.0
6,328,277	+		PFLU_RS28445	0.23	+0.6
6,328,278	-		PFLU_RS28445	0.23	+0.1
6,328,278	-		PFLU_RS28445	0.23	-1.4
6,328,278	-		PFLU_RS28445	0.23	+0.1
6,328,278	-		PFLU_RS28445	0.23	-0.5
6,328,298	+		PFLU_RS28445	0.25	+0.2
6,328,298	+		PFLU_RS28445	0.25	+0.4
6,328,298	+		PFLU_RS28445	0.25	+0.6
6,328,298	+		PFLU_RS28445	0.25	+2.4
6,328,298	+		PFLU_RS28445	0.25	+0.5
6,328,298	+		PFLU_RS28445	0.25	-0.7
6,328,298	+		PFLU_RS28445	0.25	+0.6
6,328,298	+		PFLU_RS28445	0.25	-0.7
6,328,298	+		PFLU_RS28445	0.25	+1.1
6,328,298	+		PFLU_RS28445	0.25	+0.2
6,328,298	+		PFLU_RS28445	0.25	+0.6
6,328,298	+		PFLU_RS28445	0.25	+0.6
6,328,298	+		PFLU_RS28445	0.25	-1.0
6,328,298	+		PFLU_RS28445	0.25	+0.7
6,328,298	+		PFLU_RS28445	0.25	+1.5
6,328,298	+		PFLU_RS28445	0.25	-0.7
6,328,298	+		PFLU_RS28445	0.25	-0.2
6,328,298	+		PFLU_RS28445	0.25	+0.9
6,328,298	+		PFLU_RS28445	0.25	-0.5
6,328,298	+		PFLU_RS28445	0.25	-0.9
6,328,298	+		PFLU_RS28445	0.25	+2.0
6,328,298	+		PFLU_RS28445	0.25	-0.3
6,328,298	+		PFLU_RS28445	0.25	+0.7
6,328,298	+		PFLU_RS28445	0.25	+1.2
6,328,298	+		PFLU_RS28445	0.25	+0.4
6,328,298	+		PFLU_RS28445	0.25	-1.5
6,328,298	+		PFLU_RS28445	0.25	-0.5
6,328,298	+		PFLU_RS28445	0.25	-0.3
6,328,298	+		PFLU_RS28445	0.25	-0.5
6,328,298	+		PFLU_RS28445	0.25	+1.2
6,328,299	-		PFLU_RS28445	0.25	+1.2
6,328,299	-		PFLU_RS28445	0.25	-0.6
6,328,299	-		PFLU_RS28445	0.25	-0.6
6,328,299	-		PFLU_RS28445	0.25	-0.4
6,328,299	-		PFLU_RS28445	0.25	+0.5
6,328,299	-		PFLU_RS28445	0.25	+0.4
6,328,299	-		PFLU_RS28445	0.25	+0.3
6,328,299	-		PFLU_RS28445	0.25	-0.4
6,328,299	-		PFLU_RS28445	0.25	-0.1
6,328,299	-		PFLU_RS28445	0.25	-1.0
6,328,299	-		PFLU_RS28445	0.25	-2.0
6,328,299	-		PFLU_RS28445	0.25	+0.1
6,328,299	-		PFLU_RS28445	0.25	-1.2
6,328,299	-		PFLU_RS28445	0.25	-0.6
6,328,299	-		PFLU_RS28445	0.25	+1.8
6,328,299	-		PFLU_RS28445	0.25	+0.8
6,328,299	-		PFLU_RS28445	0.25	+0.4
6,328,299	-		PFLU_RS28445	0.25	+0.9
6,328,299	-		PFLU_RS28445	0.25	+0.8
6,328,299	-		PFLU_RS28445	0.25	+1.6
6,328,299	-		PFLU_RS28445	0.25	-1.2
6,328,299	-		PFLU_RS28445	0.25	+0.7
6,328,299	-		PFLU_RS28445	0.25	-0.3
6,328,299	-		PFLU_RS28445	0.25	-1.0
6,328,299	-		PFLU_RS28445	0.25	-0.6
6,328,299	-		PFLU_RS28445	0.25	+0.3
6,328,299	-		PFLU_RS28445	0.25	+0.4
6,328,323	+		PFLU_RS28445	0.28	+0.5
6,328,324	-		PFLU_RS28445	0.28	+1.5
6,328,324	-		PFLU_RS28445	0.28	+1.5
6,328,324	-		PFLU_RS28445	0.28	+0.6
6,328,324	-		PFLU_RS28445	0.28	-0.2
6,328,333	+		PFLU_RS28445	0.29	-0.8
6,328,333	+		PFLU_RS28445	0.29	+0.1
6,328,333	+		PFLU_RS28445	0.29	-0.5
6,328,333	+		PFLU_RS28445	0.29	+0.7
6,328,333	+		PFLU_RS28445	0.29	-0.3
6,328,333	+		PFLU_RS28445	0.29	+0.3
6,328,333	+		PFLU_RS28445	0.29	-0.6
6,328,333	+		PFLU_RS28445	0.29	-1.5
6,328,333	+		PFLU_RS28445	0.29	-0.9
6,328,334	-		PFLU_RS28445	0.29	+0.2
6,328,334	-		PFLU_RS28445	0.29	-3.0
6,328,334	-		PFLU_RS28445	0.29	+1.3
6,328,334	-		PFLU_RS28445	0.29	+1.3
6,328,334	-		PFLU_RS28445	0.29	+0.3
6,328,356	+		PFLU_RS28445	0.31	-0.6
6,328,356	+		PFLU_RS28445	0.31	-0.3
6,328,356	+		PFLU_RS28445	0.31	-0.2
6,328,371	+		PFLU_RS28445	0.32	+0.1
6,328,371	+		PFLU_RS28445	0.32	+0.6
6,328,371	+		PFLU_RS28445	0.32	+0.6
6,328,371	+		PFLU_RS28445	0.32	-1.8
6,328,371	+		PFLU_RS28445	0.32	-0.4
6,328,372	-		PFLU_RS28445	0.32	+0.3
6,328,372	-		PFLU_RS28445	0.32	-0.1
6,328,372	-		PFLU_RS28445	0.32	-0.0
6,328,374	+		PFLU_RS28445	0.33	-0.7
6,328,374	+		PFLU_RS28445	0.33	+0.7
6,328,374	+		PFLU_RS28445	0.33	+0.9
6,328,375	-		PFLU_RS28445	0.33	+0.3
6,328,375	-		PFLU_RS28445	0.33	-0.6
6,328,375	-		PFLU_RS28445	0.33	+1.2
6,328,375	-		PFLU_RS28445	0.33	+0.1
6,328,375	-		PFLU_RS28445	0.33	-1.1
6,328,375	-		PFLU_RS28445	0.33	-0.4
6,328,375	-		PFLU_RS28445	0.33	+1.4
6,328,378	+		PFLU_RS28445	0.33	-0.2
6,328,378	+		PFLU_RS28445	0.33	-0.5
6,328,378	+		PFLU_RS28445	0.33	-1.0
6,328,379	-		PFLU_RS28445	0.33	-1.1
6,328,379	-		PFLU_RS28445	0.33	+0.2
6,328,379	-		PFLU_RS28445	0.33	+0.4
6,328,379	-		PFLU_RS28445	0.33	-0.8
6,328,379	-		PFLU_RS28445	0.33	+0.9
6,328,390	+		PFLU_RS28445	0.34	-1.1
6,328,391	-		PFLU_RS28445	0.34	+1.8
6,328,466	-		PFLU_RS28445	0.42	-0.1
6,328,474	+		PFLU_RS28445	0.42	+1.3
6,328,474	+		PFLU_RS28445	0.42	-0.0
6,328,474	+		PFLU_RS28445	0.42	+0.5
6,328,474	+		PFLU_RS28445	0.42	+0.7
6,328,474	+		PFLU_RS28445	0.42	-1.4
6,328,474	+		PFLU_RS28445	0.42	+0.5
6,328,475	-		PFLU_RS28445	0.42	-2.1
6,328,475	-		PFLU_RS28445	0.42	-1.2
6,328,475	-		PFLU_RS28445	0.42	-2.5
6,328,475	-		PFLU_RS28445	0.42	-0.4
6,328,475	-		PFLU_RS28445	0.42	+0.5
6,328,667	+		PFLU_RS28445	0.61	-0.8
6,328,667	+		PFLU_RS28445	0.61	+0.6
6,328,668	-		PFLU_RS28445	0.61	+0.7
6,328,668	-		PFLU_RS28445	0.61	-0.5
6,328,668	-		PFLU_RS28445	0.61	-0.9
6,328,751	+		PFLU_RS28445	0.69	-1.9
6,328,751	+		PFLU_RS28445	0.69	+0.7
6,328,751	+		PFLU_RS28445	0.69	+1.0
6,328,751	+		PFLU_RS28445	0.69	+0.0
6,328,752	-		PFLU_RS28445	0.69	-0.0
6,328,752	-		PFLU_RS28445	0.69	+0.1
6,328,752	-		PFLU_RS28445	0.69	+0.8
6,328,803	+		PFLU_RS28445	0.74	+1.1
6,328,803	+		PFLU_RS28445	0.74	-0.4
6,328,803	+		PFLU_RS28445	0.74	-0.4
6,328,803	+		PFLU_RS28445	0.74	+1.1
6,328,803	+		PFLU_RS28445	0.74	+0.2
6,328,804	-		PFLU_RS28445	0.75	+0.8
6,328,804	-		PFLU_RS28445	0.75	+1.0
6,328,806	+		PFLU_RS28445	0.75	-0.3
6,328,806	+		PFLU_RS28445	0.75	-0.2
6,328,806	+		PFLU_RS28445	0.75	+1.9
6,328,806	+		PFLU_RS28445	0.75	+1.6
6,328,806	+		PFLU_RS28445	0.75	-1.7
6,328,806	+		PFLU_RS28445	0.75	+0.2
6,328,806	+		PFLU_RS28445	0.75	-0.7
6,328,806	+		PFLU_RS28445	0.75	+0.5
6,328,806	+		PFLU_RS28445	0.75	-0.6
6,328,807	-		PFLU_RS28445	0.75	-0.9
6,329,043	+				+0.0
6,329,043	+				-0.8
6,329,064	+				+0.1
6,329,064	+				-0.7
6,329,064	+				-0.5
6,329,064	+				+0.9
6,329,064	+				-1.3
6,329,065	-				+0.5
6,329,065	-				-0.7
6,329,065	-				+0.9
6,329,235	-		PFLU_RS28450	0.26	+0.7
6,329,606	+		PFLU_RS28450	0.81	+0.0
6,329,606	+		PFLU_RS28450	0.81	-0.2
6,329,606	+		PFLU_RS28450	0.81	+0.4
6,329,606	+		PFLU_RS28450	0.81	-0.3
6,329,606	+		PFLU_RS28450	0.81	+1.4
6,329,606	+		PFLU_RS28450	0.81	+1.8
6,329,606	+		PFLU_RS28450	0.81	+0.3
6,329,607	-		PFLU_RS28450	0.81	+0.6
6,329,607	-		PFLU_RS28450	0.81	+1.0
6,329,709	-				+0.2
6,329,763	-				+0.8
6,329,763	-				+0.9
6,329,763	-				-0.3
6,329,763	-				+0.1
6,329,763	-				+2.2