Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS26070

Experiment: succinate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C); with MOPS
5,823,331	+				+1.6
5,823,396	-				-0.0
5,823,396	-				-0.9
5,823,396	-				-2.4
5,823,421	+				+2.2
5,823,421	+				+0.9
5,823,421	+				-2.0
5,823,421	+				+0.2
5,823,421	+				+0.4
5,823,421	+				-0.3
5,823,421	+				+1.1
5,823,421	+				-0.2
5,823,422	-				+0.9
5,823,422	-				+0.1
5,823,422	-				+1.4
5,823,422	-				-0.6
5,823,422	-				-0.0
5,823,422	-				-0.1
5,823,422	-				+0.3
5,823,448	+				-0.8
5,823,448	+				-0.6
5,823,448	+				-0.0
5,823,494	+		PFLU_RS26065	0.11	+0.6
5,823,495	-		PFLU_RS26065	0.11	-0.4
5,823,498	-		PFLU_RS26065	0.12	-0.1
5,823,538	+		PFLU_RS26065	0.16	+0.8
5,823,539	-		PFLU_RS26065	0.16	-1.7
5,823,539	-		PFLU_RS26065	0.16	-0.3
5,823,539	-		PFLU_RS26065	0.16	+0.6
5,823,558	-		PFLU_RS26065	0.18	+0.5
5,823,604	+		PFLU_RS26065	0.23	-0.6
5,823,604	+		PFLU_RS26065	0.23	+1.2
5,823,605	-		PFLU_RS26065	0.23	+1.1
5,823,605	-		PFLU_RS26065	0.23	-0.5
5,823,605	-		PFLU_RS26065	0.23	+1.1
5,823,633	+		PFLU_RS26065	0.27	-0.3
5,823,633	+		PFLU_RS26065	0.27	+0.3
5,823,634	-		PFLU_RS26065	0.27	-0.7
5,823,634	-		PFLU_RS26065	0.27	-0.3
5,823,634	-		PFLU_RS26065	0.27	-0.2
5,823,700	+		PFLU_RS26065	0.34	+0.5
5,823,756	+		PFLU_RS26065	0.40	+0.3
5,823,761	+		PFLU_RS26065	0.41	+0.5
5,823,762	-		PFLU_RS26065	0.41	+1.7
5,823,831	+		PFLU_RS26065	0.48	-0.3
5,823,831	+		PFLU_RS26065	0.48	-0.8
5,823,831	+		PFLU_RS26065	0.48	-0.1
5,823,831	+		PFLU_RS26065	0.48	-0.0
5,823,831	+		PFLU_RS26065	0.48	-1.1
5,823,831	+		PFLU_RS26065	0.48	-1.8
5,823,832	-		PFLU_RS26065	0.48	+0.7
5,823,832	-		PFLU_RS26065	0.48	+0.7
5,823,832	-		PFLU_RS26065	0.48	+0.1
5,823,832	-		PFLU_RS26065	0.48	-0.9
5,823,832	-		PFLU_RS26065	0.48	+1.0
5,823,832	-		PFLU_RS26065	0.48	+1.6
5,823,851	-		PFLU_RS26065	0.50	-1.4
5,823,851	-		PFLU_RS26065	0.50	+1.0
5,823,856	+		PFLU_RS26065	0.51	+0.7
5,823,857	-		PFLU_RS26065	0.51	+0.9
5,823,932	+		PFLU_RS26065	0.59	+0.2
5,823,933	-		PFLU_RS26065	0.59	+0.5
5,823,952	+		PFLU_RS26065	0.61	+1.1
5,823,975	+		PFLU_RS26065	0.64	-1.4
5,823,976	-		PFLU_RS26065	0.64	-0.3
5,824,011	-		PFLU_RS26065	0.68	+1.0
5,824,027	+		PFLU_RS26065	0.70	-0.1
5,824,028	-		PFLU_RS26065	0.70	+0.2
5,824,028	-		PFLU_RS26065	0.70	+0.2
5,824,031	+		PFLU_RS26065	0.70	-1.2
5,824,031	+		PFLU_RS26065	0.70	+0.9
5,824,031	+		PFLU_RS26065	0.70	+0.8
5,824,031	+		PFLU_RS26065	0.70	-0.3
5,824,031	+		PFLU_RS26065	0.70	-0.4
5,824,032	-		PFLU_RS26065	0.70	+3.2
5,824,032	-		PFLU_RS26065	0.70	-1.2
5,824,032	-		PFLU_RS26065	0.70	-0.5
5,824,032	-		PFLU_RS26065	0.70	+0.1
5,824,057	-		PFLU_RS26065	0.73	-0.2
5,824,112	+		PFLU_RS26065	0.79	+0.2
5,824,112	+		PFLU_RS26065	0.79	-1.1
5,824,113	-		PFLU_RS26065	0.79	+0.2
5,824,116	+		PFLU_RS26065	0.79	+2.2
5,824,117	-		PFLU_RS26065	0.79	+0.0
5,824,117	-		PFLU_RS26065	0.79	+3.2
5,824,194	-		PFLU_RS26065	0.88	-1.6
5,824,199	+		PFLU_RS26065	0.88	+0.3
5,824,200	-		PFLU_RS26065	0.89	-2.1
5,824,238	-				+0.9
5,824,240	+				+0.5
5,824,241	-				-0.6
5,824,269	-				-0.5
5,824,269	-				+0.7
5,824,392	+				+0.0
5,824,392	+				-0.3
5,824,394	+				+0.5
5,824,394	+				+0.6
5,824,395	-				+0.5
5,824,395	-				+0.8
5,824,415	+		PFLU_RS26070	0.12	+1.1
5,824,415	+		PFLU_RS26070	0.12	+0.6
5,824,415	+		PFLU_RS26070	0.12	+0.6
5,824,416	-		PFLU_RS26070	0.12	-0.7
5,824,416	-		PFLU_RS26070	0.12	-0.1
5,824,416	-		PFLU_RS26070	0.12	+0.4
5,824,416	-		PFLU_RS26070	0.12	+0.7
5,824,420	-		PFLU_RS26070	0.13	+0.5
5,824,514	+		PFLU_RS26070	0.23	-0.8
5,824,514	+		PFLU_RS26070	0.23	-1.3
5,824,514	+		PFLU_RS26070	0.23	+0.7
5,824,515	-		PFLU_RS26070	0.23	-0.2
5,824,515	-		PFLU_RS26070	0.23	+0.6
5,824,526	+		PFLU_RS26070	0.24	+0.2
5,824,527	-		PFLU_RS26070	0.24	-0.2
5,824,527	-		PFLU_RS26070	0.24	+0.6
5,824,542	+		PFLU_RS26070	0.26	-0.4
5,824,543	-		PFLU_RS26070	0.26	-2.0
5,824,543	-		PFLU_RS26070	0.26	+0.1
5,824,543	-		PFLU_RS26070	0.26	+1.7
5,824,543	-		PFLU_RS26070	0.26	-1.6
5,824,574	+		PFLU_RS26070	0.30	-0.4
5,824,575	-		PFLU_RS26070	0.30	+0.0
5,824,603	+		PFLU_RS26070	0.33	+0.1
5,824,603	+		PFLU_RS26070	0.33	+1.1
5,824,603	+		PFLU_RS26070	0.33	-1.0
5,824,603	+		PFLU_RS26070	0.33	+0.7
5,824,604	-		PFLU_RS26070	0.33	-0.0
5,824,604	-		PFLU_RS26070	0.33	+1.3
5,824,604	-		PFLU_RS26070	0.33	+1.2
5,824,605	+		PFLU_RS26070	0.33	+0.2
5,824,668	+		PFLU_RS26070	0.40	+1.0
5,824,691	+		PFLU_RS26070	0.42	+1.1
5,824,691	+		PFLU_RS26070	0.42	-1.9
5,824,691	+		PFLU_RS26070	0.42	-0.1
5,824,691	+		PFLU_RS26070	0.42	+0.7
5,824,691	+		PFLU_RS26070	0.42	+0.5
5,824,707	+		PFLU_RS26070	0.44	-0.6
5,824,767	-		PFLU_RS26070	0.51	-1.0
5,824,769	+		PFLU_RS26070	0.51	-0.2
5,824,769	+		PFLU_RS26070	0.51	+0.1
5,824,770	-		PFLU_RS26070	0.51	+0.8
5,824,779	+		PFLU_RS26070	0.52	+0.9
5,824,780	-		PFLU_RS26070	0.52	-1.9
5,824,891	+		PFLU_RS26070	0.65	+0.3
5,824,904	+		PFLU_RS26070	0.66	+0.0
5,824,905	-		PFLU_RS26070	0.66	+0.3
5,825,020	+		PFLU_RS26070	0.79	-0.3
5,825,020	+		PFLU_RS26070	0.79	-0.2
5,825,021	-		PFLU_RS26070	0.79	+1.2
5,825,064	-		PFLU_RS26070	0.84	-0.3
5,825,080	+		PFLU_RS26070	0.85	-0.6
5,825,080	+		PFLU_RS26070	0.85	+0.1
5,825,120	-		PFLU_RS26070	0.90	+1.2
5,825,123	+				+1.6
5,825,123	+				+0.1
5,825,124	-				+0.3
5,825,124	-				+0.7
5,825,124	-				+0.9
5,825,156	+				-0.4
5,825,156	+				+0.1
5,825,157	-				-1.8
5,825,178	+				-0.0
5,825,179	-				+1.8
5,825,179	-				+0.1
5,825,233	+				-0.0
5,825,234	-				+0.8
5,825,234	-				-0.2
5,825,267	+				+1.0
5,825,267	+				+0.6
5,825,268	-				+0.6
5,825,313	-				-0.1
5,825,313	-				-0.4
5,825,319	+				+1.4
5,825,319	+				-0.7
5,825,319	+				-0.8
5,825,319	+				-0.5
5,825,320	-				-0.1
5,825,320	-				+0.1
5,825,320	-				+0.8
5,825,320	-				-1.3
5,825,320	-				+0.3
5,825,320	-				+0.7
5,825,320	-				-0.2
5,825,320	-				+0.0
5,825,335	+				+1.2
5,825,335	+				+0.6
5,825,339	+				-0.9
5,825,340	-				+0.5
5,825,340	-				-2.3
5,825,364	+				+0.8
5,825,365	-				+0.9
5,825,365	-				+0.5
5,825,384	+				+0.3
5,825,385	-				-2.1
5,825,388	-				-1.6
5,825,408	+				-1.1
5,825,409	-				+0.3
5,825,421	+				+0.1
5,825,421	+				+0.6
5,825,425	+				-3.4
5,825,449	+				-1.8
5,825,450	-				-0.0
5,825,503	+		PFLU_RS26075	0.12	+1.0
5,825,517	+		PFLU_RS26075	0.16	+0.9
5,825,517	+		PFLU_RS26075	0.16	+0.2
5,825,518	-		PFLU_RS26075	0.17	-2.4
5,825,518	-		PFLU_RS26075	0.17	-0.6
5,825,518	-		PFLU_RS26075	0.17	+1.0
5,825,518	-		PFLU_RS26075	0.17	+0.4
5,825,518	-		PFLU_RS26075	0.17	+0.3
5,825,623	+		PFLU_RS26075	0.47	-0.1
5,825,666	+		PFLU_RS26075	0.60	-0.4
5,825,666	+		PFLU_RS26075	0.60	+1.6
5,825,666	+		PFLU_RS26075	0.60	-1.3
5,825,666	+		PFLU_RS26075	0.60	+0.3
5,825,727	+		PFLU_RS26075	0.78	-0.2
5,825,741	+		PFLU_RS26075	0.82	+0.5
5,825,742	-		PFLU_RS26075	0.82	-0.0
5,825,742	-		PFLU_RS26075	0.82	-0.1
5,825,781	+				-0.5
5,825,781	+				-0.3
5,825,781	+				-1.1
5,825,916	+		PFLU_RS26080	0.44	-0.1
5,825,916	+		PFLU_RS26080	0.44	-0.4
5,825,917	-		PFLU_RS26080	0.44	-1.4
5,825,917	-		PFLU_RS26080	0.44	+1.7
5,825,947	+		PFLU_RS26080	0.52	+0.7
5,825,948	-		PFLU_RS26080	0.52	-1.4
5,825,975	+		PFLU_RS26080	0.59	-1.2
5,825,975	+		PFLU_RS26080	0.59	-0.8
5,825,975	+		PFLU_RS26080	0.59	-0.2
5,825,976	-		PFLU_RS26080	0.59	+0.3
5,825,976	-		PFLU_RS26080	0.59	+0.9
5,825,976	-		PFLU_RS26080	0.59	+1.5
5,826,079	+		PFLU_RS26080	0.86	+1.9
5,826,079	+		PFLU_RS26080	0.86	+1.4
5,826,080	-		PFLU_RS26080	0.86	+1.1
5,826,080	-		PFLU_RS26080	0.86	-0.4
5,826,080	-		PFLU_RS26080	0.86	+0.7
5,826,080	-		PFLU_RS26080	0.86	+1.2
5,826,103	+				+0.4
5,826,103	+				-0.3
5,826,103	+				-0.2
5,826,103	+				+0.4
5,826,103	+				+0.3
5,826,103	+				+0.2
5,826,104	-				-0.6
5,826,104	-				+0.3
5,826,104	-				-0.1
5,826,122	+				+0.4
5,826,122	+				+0.8
5,826,122	+				+0.6
5,826,122	+				+2.0
5,826,123	-				-1.1
5,826,123	-				-1.1
5,826,123	-				+1.6
5,826,123	-				-0.9
5,826,123	-				+1.2
5,826,123	-				-1.0
5,826,132	+				-1.2
5,826,132	+				-0.6
5,826,132	+				-1.1
5,826,132	+				+0.1
5,826,133	-				+0.4
5,826,133	-				-0.0
5,826,133	-				-0.4
5,826,133	-				+1.1
5,826,135	+				-1.6
5,826,135	+				-1.9
5,826,136	-				+0.9
5,826,136	-				+0.0
5,826,136	-				-0.3
5,826,136	-				-0.2
5,826,144	+				+0.2
5,826,144	+				-0.5
5,826,144	+				-0.6
5,826,144	+				+2.0
5,826,144	+				+0.4
5,826,144	+				+0.2
5,826,145	-				-0.7
5,826,145	-				+0.6
5,826,145	-				-0.1
5,826,145	-				+0.2
5,826,145	-				-0.2
5,826,145	-				+1.4
5,826,146	+				-2.2
5,826,146	+				-1.9
5,826,146	+				-0.1
5,826,146	+				-1.0
5,826,146	+				-0.6
5,826,146	+				+0.6
5,826,146	+				-0.4
5,826,146	+				-0.3
5,826,146	+				+0.5
5,826,146	+				-0.6
5,826,146	+				+0.3
5,826,146	+				+1.0
5,826,146	+				+1.7
5,826,146	+				-0.0
5,826,147	-				-1.4
5,826,147	-				+1.0
5,826,147	-				-1.1
5,826,147	-				-0.4
5,826,147	-				+0.0
5,826,147	-				+1.0
5,826,147	-				+0.7
5,826,147	-				-0.1
5,826,147	-				+0.2
5,826,147	-				-0.0